Variant report

Variant	rs557026858
Chromosome Location	chr10:50949418-50949419
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv895378	chr10:50801342-50955649	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1048905	chr10:50928727-51019190	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3318018	chr10:50947746-50952444	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region	1 gene(s)	inside rSNPs	diseases
7	esv3318029	chr10:50947746-50952444	Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Enhancers Genic enhancers Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
8	esv3401087	chr10:50948446-50954144	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50935200-50949600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:50940400-50949600	Weak transcription	Fetal Heart	heart
3	chr10:50940400-50953400	Weak transcription	Brain Hippocampus Middle	brain
4	chr10:50940600-50966000	Strong transcription	Liver	Liver
5	chr10:50941000-50951600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr10:50941200-50965400	Weak transcription	Brain Germinal Matrix	brain
7	chr10:50942000-50949600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr10:50943000-50956400	Strong transcription	Brain Anterior Caudate	brain
9	chr10:50943200-50969400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:50943400-50956200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:50943600-50949600	Strong transcription	Fetal Intestine Small	intestine
12	chr10:50943800-50956000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:50944000-50969400	Weak transcription	Brain Substantia Nigra	brain
14	chr10:50944400-50950000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr10:50944400-50952400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr10:50944800-50951600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr10:50945400-50953000	Weak transcription	Ovary	ovary
18	chr10:50946200-50949600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr10:50946200-50951600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr10:50946200-50955200	Weak transcription	Fetal Brain Female	brain
21	chr10:50946400-50949600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr10:50946400-50949600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr10:50946400-50950200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr10:50946600-50950200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr10:50946800-50949800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr10:50947200-50952400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr10:50947800-50960400	Strong transcription	Brain Angular Gyrus	brain
28	chr10:50948000-50956600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr10:50948600-50949800	Strong transcription	Pancreas	Pancrea
30	chr10:50948600-50955600	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr10:50948800-50956600	Strong transcription	Brain Inferior Temporal Lobe	brain
32	chr10:50949000-50953800	Weak transcription	Gastric	stomach
33	chr10:50949400-50950000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:50949400-50950000	Active TSS	Spleen	Spleen

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