Variant report

Variant	rs55703768
Chromosome Location	chr2:210390161-210390162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11884711	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11885022	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11885999	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11895827	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11896762	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12614655	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12621170	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13013173	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13025402	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1563122	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1563123	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1563124	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1563125	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16843019	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16843022	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16843034	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2219086	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs288048	0.87[ASN][1000 genomes]
rs288049	0.87[ASN][1000 genomes]
rs288052	0.93[ASN][1000 genomes]
rs288054	0.93[ASN][1000 genomes]
rs288055	0.95[ASN][1000 genomes]
rs288079	0.81[EUR][1000 genomes]
rs288084	0.82[EUR][1000 genomes]
rs288091	0.90[EUR][1000 genomes]
rs288094	0.88[EUR][1000 genomes]
rs34951382	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35832475	0.81[ASN][1000 genomes]
rs60120123	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7565225	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7604320	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9917164	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834519	chr2:210271017-210400153	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210364600-210392200	Weak transcription	Pancreas	Pancrea
2	chr2:210371400-210391000	Weak transcription	Aorta	Aorta
3	chr2:210378800-210390200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:210382200-210391600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr2:210383000-210391000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:210387000-210391600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:210387800-210392600	Enhancers	Primary B cells from peripheral blood	blood
8	chr2:210388000-210390200	Enhancers	Primary B cells from cord blood	blood
9	chr2:210388200-210390800	Enhancers	GM12878-XiMat	blood
10	chr2:210388200-210391000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr2:210388400-210390200	Weak transcription	Ovary	ovary
12	chr2:210388400-210392200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr2:210388400-210392200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr2:210388400-210402200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:210388600-210391200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr2:210388800-210390200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr2:210388800-210390200	Weak transcription	NHDF-Ad	bronchial
18	chr2:210388800-210391200	Enhancers	NH-A	brain
19	chr2:210389000-210390800	Weak transcription	Fetal Brain Female	brain
20	chr2:210389000-210391200	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr2:210389200-210390200	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr2:210389400-210391800	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr2:210389600-210390800	Enhancers	NHLF	lung
24	chr2:210389600-210391000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr2:210389600-210391200	Weak transcription	Brain Anterior Caudate	brain
26	chr2:210389800-210390200	Enhancers	Primary hematopoietic stem cells	blood
27	chr2:210390000-210390200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr2:210390000-210390200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr2:210390000-210390200	Weak transcription	Fetal Stomach	stomach
30	chr2:210390000-210390400	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr2:210390000-210390400	Enhancers	Fetal Thymus	thymus
32	chr2:210390000-210390400	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr2:210390000-210390400	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr2:210390000-210390600	Flanking Active TSS	HUVEC	blood vessel
35	chr2:210390000-210391000	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr2:210390000-210391200	Enhancers	Osteobl	bone
37	chr2:210390000-210391600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr2:210390000-210391800	Enhancers	HSMM	muscle
39	chr2:210390000-210392000	Enhancers	Dnd41	blood

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