Variant report

Variant	rs55706115
Chromosome Location	chr11:56105123-56105124
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs12272629	0.94[EUR][1000 genomes]
rs17541821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17541876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17546536	0.88[EUR][1000 genomes]
rs17613345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17627302	0.91[EUR][1000 genomes]
rs17628586	0.89[EUR][1000 genomes]
rs17628691	0.89[EUR][1000 genomes]
rs17629033	0.88[EUR][1000 genomes]
rs1807254	0.89[EUR][1000 genomes]
rs55771448	0.89[EUR][1000 genomes]
rs55892403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56077409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56149224	1.00[AFR][1000 genomes]
rs56163075	0.88[EUR][1000 genomes]
rs56394926	0.86[EUR][1000 genomes]
rs61887243	1.00[AFR][1000 genomes]
rs61888282	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61888286	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61888289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61888309	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61888312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61888313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61901983	0.91[EUR][1000 genomes]
rs61902021	0.89[EUR][1000 genomes]
rs61902022	0.89[EUR][1000 genomes]
rs61902863	0.89[EUR][1000 genomes]
rs61902883	0.89[EUR][1000 genomes]
rs61902885	0.89[EUR][1000 genomes]
rs61902915	0.89[EUR][1000 genomes]
rs61902916	0.89[EUR][1000 genomes]
rs61902921	0.89[EUR][1000 genomes]
rs61903478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61903482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61903483	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61903484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61903485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61903486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61903487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61903530	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61903531	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61903536	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61903537	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61903541	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7103598	0.91[EUR][1000 genomes]
rs7106248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7119614	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7121384	1.00[EUR][1000 genomes]
rs7121385	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7121991	0.89[EUR][1000 genomes]
rs7124023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7125690	0.91[EUR][1000 genomes]
rs7126549	0.89[EUR][1000 genomes]
rs716103	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs716104	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7932621	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7951134	0.94[EUR][1000 genomes]
rs7951506	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975114	chr11:55751535-56124251	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv1044859	chr11:55900482-56121727	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
4	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
5	nsv832161	chr11:56046173-56166964	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
6	nsv555096	chr11:56084444-56235061	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
7	nsv555097	chr11:56084611-56235061	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56104400-56105400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
2	chr11:56104600-56105200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:56104800-56105200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr11:56104800-56105400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr11:56105000-56105200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr11:56105000-56105200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr11:56105000-56105400	Active TSS	ES-WA7 Cell Line	embryonic stem cell

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