Variant report

Variant	rs55707150
Chromosome Location	chr2:184036284-184036285
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:184022891..184025672-chr2:184035459..184037994,2	K562	blood:
2	chr2:183987752..183989755-chr2:184035957..184037928,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163002	Chromatin interaction

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs1473614	1.00[EUR][1000 genomes]
rs1473615	1.00[EUR][1000 genomes]
rs1473616	1.00[EUR][1000 genomes]
rs2675053	0.92[EUR][1000 genomes]
rs2675054	1.00[EUR][1000 genomes]
rs2705715	1.00[EUR][1000 genomes]
rs2705718	1.00[EUR][1000 genomes]
rs2705719	1.00[EUR][1000 genomes]
rs2705720	1.00[EUR][1000 genomes]
rs2705721	1.00[EUR][1000 genomes]
rs35142583	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55657876	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55678810	0.86[AMR][1000 genomes]
rs55696219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55764044	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55957340	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56182353	0.88[EUR][1000 genomes]
rs6712479	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6722457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6743323	0.88[EUR][1000 genomes]
rs6750392	0.88[EUR][1000 genomes]
rs72886577	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72886596	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72886600	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72888431	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72888449	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72888452	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72888461	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72888464	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72888472	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72888474	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72888478	0.86[EUR][1000 genomes]
rs72888481	0.86[EUR][1000 genomes]
rs72888488	0.86[EUR][1000 genomes]
rs72888489	0.86[EUR][1000 genomes]
rs72890307	0.88[EUR][1000 genomes]
rs72890345	0.97[EUR][1000 genomes]
rs72890349	0.90[EUR][1000 genomes]
rs72890352	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72890353	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72890370	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72890384	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72890392	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72890398	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72892604	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72892631	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72892638	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72892656	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72892689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72892694	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72892702	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894503	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894513	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894535	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894546	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894593	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896517	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896518	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896520	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896534	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896555	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896559	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896567	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896586	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72896598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898507	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898512	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898513	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898514	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898538	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72898539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898542	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898545	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72898548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898555	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898558	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898562	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72898566	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898569	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898573	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898574	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898578	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72898581	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898584	0.86[EUR][1000 genomes]
rs72898600	0.86[AMR][1000 genomes]
rs72900543	0.86[AMR][1000 genomes]
rs7562034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7565260	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7567370	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7577407	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7597417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1005281	chr2:183803173-184093877	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv875485	chr2:183827018-184195265	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1010799	chr2:183855680-184244721	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv536072	chr2:183855680-184244721	Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	esv2763287	chr2:183939173-184037893	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv875486	chr2:184016627-184095979	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv821842	chr2:184030701-184037931	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183990000-184050000	Weak transcription	Aorta	Aorta
2	chr2:183990200-184036400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:183991000-184048400	Weak transcription	Brain Angular Gyrus	brain
4	chr2:183991000-184053400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr2:183991000-184055400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr2:183991400-184049600	Weak transcription	NHDF-Ad	bronchial
7	chr2:183992400-184047600	Weak transcription	Hela-S3	cervix
8	chr2:184009000-184043800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:184009200-184043600	Weak transcription	Psoas Muscle	Psoas
10	chr2:184009200-184048400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr2:184009400-184047200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr2:184015000-184062000	Weak transcription	Small Intestine	intestine
13	chr2:184018400-184047400	Weak transcription	Pancreas	Pancrea
14	chr2:184019000-184036600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr2:184019000-184043600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr2:184019000-184050000	Weak transcription	Gastric	stomach
17	chr2:184019000-184053400	Weak transcription	Placenta	Placenta
18	chr2:184026000-184054600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr2:184026000-184057600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr2:184026600-184043200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr2:184026600-184058800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr2:184026800-184047400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr2:184027600-184057600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr2:184028600-184045600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr2:184028800-184043200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr2:184028800-184043600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr2:184029000-184036400	Weak transcription	Spleen	Spleen
28	chr2:184029000-184047400	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr2:184029200-184036800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr2:184029200-184043000	Weak transcription	Colon Smooth Muscle	Colon
31	chr2:184029200-184043200	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr2:184029200-184043600	Weak transcription	Right Ventricle	heart
33	chr2:184029200-184047200	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr2:184029200-184047200	Weak transcription	HepG2	liver
35	chr2:184029200-184047400	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr2:184029200-184047400	Weak transcription	HSMM	muscle
37	chr2:184029200-184050000	Weak transcription	HUVEC	blood vessel
38	chr2:184029200-184054800	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr2:184029200-184062800	Weak transcription	Rectal Smooth Muscle	rectum
40	chr2:184029400-184039200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr2:184029400-184040400	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr2:184029400-184043400	Weak transcription	Adipose Nuclei	Adipose
43	chr2:184029400-184043400	Weak transcription	Left Ventricle	heart
44	chr2:184029400-184043400	Weak transcription	Ovary	ovary
45	chr2:184029400-184043600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr2:184029400-184043600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr2:184029400-184043600	Weak transcription	Lung	lung
48	chr2:184029400-184043800	Weak transcription	NH-A	brain
49	chr2:184029400-184045800	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr2:184029400-184047400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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