Variant report

Variant	rs55712817
Chromosome Location	chr11:70913041-70913042
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:70912656..70917143-chr11:70958858..70961593,4	MCF-7	breast:
2	chr11:70908146..70914464-chr11:70915141..70919274,9	MCF-7	breast:
3	chr11:70891254..70894257-chr11:70911354..70914113,3	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11232452	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11232477	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11232508	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11232576	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11232591	0.87[AMR][1000 genomes]
rs11822742	1.00[EUR][1000 genomes]
rs11826649	1.00[EUR][1000 genomes]
rs3934693	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4072326	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4943820	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4943871	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55656100	0.82[EUR][1000 genomes]
rs55690281	1.00[EUR][1000 genomes]
rs55788978	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55836628	0.82[EUR][1000 genomes]
rs55897315	1.00[EUR][1000 genomes]
rs55928066	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56162839	1.00[EUR][1000 genomes]
rs56220831	0.82[EUR][1000 genomes]
rs56255416	1.00[EUR][1000 genomes]
rs56368604	1.00[EUR][1000 genomes]
rs57007124	1.00[EUR][1000 genomes]
rs58661988	0.82[EUR][1000 genomes]
rs58984468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59417145	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs59894456	1.00[EUR][1000 genomes]
rs61037105	1.00[EUR][1000 genomes]
rs73521132	0.82[EUR][1000 genomes]
rs73521141	0.82[EUR][1000 genomes]
rs7944885	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70892800-70915400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:70893200-70915400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr11:70895800-70917000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:70899800-70917200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:70901800-70916200	Weak transcription	Lung	lung
6	chr11:70906000-70913400	Weak transcription	Liver	Liver
7	chr11:70906000-70917200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:70906000-70917200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr11:70906000-70928600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr11:70906200-70916000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr11:70906200-70916800	Weak transcription	Fetal Intestine Large	intestine
12	chr11:70908200-70917600	Strong transcription	HepG2	liver
13	chr11:70909200-70913600	Weak transcription	A549	lung
14	chr11:70910600-70915400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:70910800-70914800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:70910800-70916800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:70911000-70915400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:70911600-70917000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr11:70911800-70916200	Strong transcription	Fetal Intestine Small	intestine
20	chr11:70911800-70916800	Weak transcription	HSMMtube	muscle
21	chr11:70911800-70917200	Weak transcription	Fetal Kidney	kidney
22	chr11:70912000-70917000	Weak transcription	HSMM	muscle
23	chr11:70912400-70913400	Weak transcription	Fetal Stomach	stomach
24	chr11:70912600-70914200	Enhancers	Placenta	Placenta
25	chr11:70912600-70915800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:70913000-70913600	Enhancers	Stomach Mucosa	stomach
27	chr11:70913000-70914200	Enhancers	Gastric	stomach
28	chr11:70913000-70914200	Enhancers	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links