Variant report

Variant	rs55714548
Chromosome Location	chr6:38938453-38938454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10305417	1.00[EUR][1000 genomes]
rs10305519	1.00[EUR][1000 genomes]
rs41376545	1.00[EUR][1000 genomes]
rs55643263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55650855	1.00[EUR][1000 genomes]
rs56113843	1.00[EUR][1000 genomes]
rs56765616	1.00[AMR][1000 genomes]
rs57188158	1.00[EUR][1000 genomes]
rs58092834	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59648883	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60160720	1.00[EUR][1000 genomes]
rs60702678	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61232244	1.00[EUR][1000 genomes]
rs73410586	1.00[EUR][1000 genomes]
rs73410602	1.00[EUR][1000 genomes]
rs73412406	1.00[EUR][1000 genomes]
rs73412421	1.00[EUR][1000 genomes]
rs73412424	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412493	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73414403	1.00[EUR][1000 genomes]
rs73424127	1.00[EUR][1000 genomes]
rs73426190	1.00[EUR][1000 genomes]
rs73428116	1.00[EUR][1000 genomes]
rs7739218	1.00[EUR][1000 genomes]
rs7756833	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv885821	chr6:38843970-39039503	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv602962	chr6:38907202-38940282	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv948357	chr6:38920998-39035836	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38938200-38939200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:38938200-38942200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:38938400-38938600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood

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