Variant report

Variant	rs557167888
Chromosome Location	chr19:52938716-52938717
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066537	chr19:52794424-53044977	Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv544060	chr19:52794424-53044977	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	esv2762048	chr19:52895166-52997571	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv580026	chr19:52937100-53059872	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1063648	chr19:52938131-53041119	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv3415774	chr19:52938189-52970794	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:52923400-52939800	Weak transcription	Right Ventricle	heart
2	chr19:52927400-52941200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr19:52929000-52941400	Weak transcription	Brain Substantia Nigra	brain
4	chr19:52930000-52941400	Weak transcription	Brain Hippocampus Middle	brain
5	chr19:52936800-52939000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
6	chr19:52937000-52939000	Strong transcription	Brain Inferior Temporal Lobe	brain
7	chr19:52937000-52939000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
8	chr19:52937200-52941200	Strong transcription	Skeletal Muscle Female	skeletal muscle
9	chr19:52937600-52938800	Strong transcription	Brain Angular Gyrus	brain
10	chr19:52938000-52939000	ZNF genes & repeats	Adipose Nuclei	Adipose
11	chr19:52938200-52938800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr19:52938200-52938800	ZNF genes & repeats	Psoas Muscle	Psoas
13	chr19:52938400-52939000	ZNF genes & repeats	Aorta	Aorta
14	chr19:52938400-52939000	ZNF genes & repeats	Brain Anterior Caudate	brain
15	chr19:52938400-52939000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr19:52938400-52939000	ZNF genes & repeats	Ovary	ovary
17	chr19:52938400-52939000	Strong transcription	Skeletal Muscle Male	skeletal muscle
18	chr19:52938600-52939000	ZNF genes & repeats	Left Ventricle	heart
19	chr19:52938600-52939000	ZNF genes & repeats	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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