Variant report

Variant	rs557189870
Chromosome Location	chr3:143221509-143221510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv511204	chr3:143215072-143222874	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv523529	chr3:143215472-143229569	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv10334	chr3:143217154-143221569	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3515177	chr3:143218412-143222610	Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	esv3496002	chr3:143218912-143222210	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv513083	chr3:143219541-143221770	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv518873	chr3:143220697-143237419	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv965219	chr3:143220938-143222984	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143186000-143223000	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr3:143191400-143231000	Weak transcription	Primary B cells from cord blood	blood
3	chr3:143201800-143226400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:143209000-143226800	Weak transcription	Adipose Nuclei	Adipose
5	chr3:143212600-143224800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr3:143212600-143247400	Weak transcription	Primary T cells from cord blood	blood
7	chr3:143215600-143226800	Weak transcription	Fetal Stomach	stomach
8	chr3:143219800-143222200	Weak transcription	Esophagus	oesophagus
9	chr3:143220400-143221800	Enhancers	Fetal Lung	lung
10	chr3:143220400-143226400	Weak transcription	HSMMtube	muscle
11	chr3:143220800-143226600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr3:143221000-143222400	Weak transcription	Spleen	Spleen
13	chr3:143221000-143227200	Weak transcription	Brain Substantia Nigra	brain
14	chr3:143221200-143224000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr3:143221200-143226800	Weak transcription	Brain Hippocampus Middle	brain
16	chr3:143221200-143228200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr3:143221400-143223800	Weak transcription	Fetal Muscle Leg	muscle
18	chr3:143221400-143224600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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