Variant report

Variant	rs557190109
Chromosome Location	chr1:194014215-194014216
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv872834	chr1:193889533-194482304	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv872835	chr1:194014041-194051568	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:194010200-194020800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr1:194012800-194014400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr1:194013000-194014600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:194013000-194015200	Enhancers	NHEK	skin
5	chr1:194013200-194014400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:194013200-194014400	Enhancers	Primary T cells from cord blood	blood
7	chr1:194013200-194014400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr1:194013200-194016600	Enhancers	Hela-S3	cervix
9	chr1:194013800-194014400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:194013800-194015000	Enhancers	A549	lung
11	chr1:194014200-194015200	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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