Variant report

Variant	rs55720401
Chromosome Location	chr3:155955355-155955356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17307030	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17307121	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17307351	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57615525	1.00[ASN][1000 genomes]
rs6790987	1.00[ASN][1000 genomes]
rs6809972	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73026681	1.00[ASN][1000 genomes]
rs73026692	1.00[ASN][1000 genomes]
rs73026697	1.00[ASN][1000 genomes]
rs73876115	1.00[ASN][1000 genomes]
rs73876120	1.00[ASN][1000 genomes]
rs7647673	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155952000-155959200	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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