Variant report

Variant	rs55723212
Chromosome Location	chr14:65466226-65466227
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65464056..65466546-chr14:65473850..65475382,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11628676	1.00[ASN][1000 genomes]
rs55836818	1.00[ASN][1000 genomes]
rs56012740	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56328485	1.00[ASN][1000 genomes]
rs56354838	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56381821	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57581750	1.00[ASN][1000 genomes]
rs59414553	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61596817	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7159356	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72728221	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728225	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728226	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728227	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72728229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72728238	1.00[ASN][1000 genomes]

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65454400-65472600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:65454600-65470200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:65454600-65470600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr14:65454600-65472200	Weak transcription	Esophagus	oesophagus
5	chr14:65454800-65469600	Weak transcription	Brain Angular Gyrus	brain
6	chr14:65454800-65473000	Weak transcription	Fetal Kidney	kidney
7	chr14:65454800-65478200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr14:65454800-65478400	Weak transcription	Brain Anterior Caudate	brain
9	chr14:65454800-65482800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr14:65454800-65513800	Weak transcription	Stomach Mucosa	stomach
11	chr14:65455000-65470800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:65455200-65469400	Weak transcription	Fetal Lung	lung
13	chr14:65455200-65469400	Weak transcription	K562	blood
14	chr14:65455200-65476000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr14:65455200-65479000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr14:65455600-65473000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr14:65455600-65478400	Weak transcription	Brain Germinal Matrix	brain
18	chr14:65457200-65472200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr14:65457200-65472400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr14:65457400-65471000	Weak transcription	Thymus	Thymus
21	chr14:65457400-65476600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr14:65457600-65467200	Weak transcription	Left Ventricle	heart
23	chr14:65457600-65470800	Weak transcription	Primary T cells from cord blood	blood
24	chr14:65457600-65478400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr14:65457600-65479200	Weak transcription	Primary B cells from peripheral blood	blood
26	chr14:65457600-65479200	Weak transcription	Right Ventricle	heart
27	chr14:65457600-65499800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr14:65457800-65472400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr14:65457800-65472400	Weak transcription	Gastric	stomach
30	chr14:65457800-65474800	Weak transcription	Fetal Muscle Leg	muscle
31	chr14:65458000-65472400	Weak transcription	Fetal Thymus	thymus
32	chr14:65458000-65478400	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr14:65458600-65472400	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr14:65458600-65476000	Weak transcription	Spleen	Spleen
35	chr14:65458800-65471000	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr14:65458800-65474400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr14:65459400-65508000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr14:65459600-65470800	Weak transcription	Liver	Liver
39	chr14:65460000-65466600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr14:65460000-65469600	Weak transcription	Ovary	ovary
41	chr14:65460000-65470800	Weak transcription	Fetal Stomach	stomach
42	chr14:65460000-65471200	Weak transcription	Fetal Intestine Small	intestine
43	chr14:65460000-65472000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr14:65460000-65472400	Weak transcription	Lung	lung
45	chr14:65460600-65469400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr14:65460600-65472600	Weak transcription	Primary B cells from cord blood	blood
47	chr14:65461000-65478600	Weak transcription	Primary hematopoietic stem cells	blood
48	chr14:65461200-65471000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr14:65461400-65472400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr14:65461400-65472400	Weak transcription	Duodenum Mucosa	Duodenum

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