Variant report

Variant	rs557237090
Chromosome Location	chr7:6486028-6486029
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:6485398..6489202-chr7:6520855..6525273,5	MCF-7	breast:
2	chr7:6412857..6414877-chr7:6485942..6488132,2	MCF-7	breast:
3	chr7:6474092..6477009-chr7:6483600..6487126,3	K562	blood:

Variant related genes	Relation type
ENSG00000136238	Chromatin interaction
ENSG00000136240	Chromatin interaction
ENSG00000269781	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948912	chr7:5803903-6623553	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv1034060	chr7:5814823-6745710	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
3	nsv538711	chr7:5814823-6745710	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
4	nsv1028242	chr7:5819084-6645024	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
5	nsv538712	chr7:5819084-6645024	Weak transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
6	nsv949531	chr7:5949371-6753694	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
7	nsv1020236	chr7:6248930-6690377	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv497874	chr7:6296768-6614902	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
9	esv1824738	chr7:6431933-6554222	Transcr. at gene 5' and 3' Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
10	esv1825865	chr7:6431933-6554222	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
11	nsv971152	chr7:6485642-6509340	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6453000-6486800	Weak transcription	Small Intestine	intestine
2	chr7:6456800-6486800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:6465000-6486600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:6465800-6486400	Weak transcription	Colonic Mucosa	Colon
5	chr7:6466000-6486400	Weak transcription	Aorta	Aorta
6	chr7:6476200-6486400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr7:6476400-6486400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr7:6478800-6486600	Weak transcription	Fetal Heart	heart
9	chr7:6479200-6486400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr7:6479400-6486400	Weak transcription	Right Atrium	heart
11	chr7:6481400-6486400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:6482000-6486400	Weak transcription	GM12878-XiMat	blood
13	chr7:6482200-6486200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr7:6482200-6486200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr7:6482200-6486400	Weak transcription	Stomach Mucosa	stomach
16	chr7:6482400-6486400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr7:6482400-6486400	Weak transcription	Brain Angular Gyrus	brain
18	chr7:6485000-6486400	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr7:6485200-6486200	Weak transcription	Primary B cells from peripheral blood	blood
20	chr7:6485200-6486200	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr7:6485200-6486200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:6485200-6486400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr7:6485200-6486400	Weak transcription	Ovary	ovary
24	chr7:6485200-6486400	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr7:6485400-6486200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr7:6485400-6486200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr7:6485400-6486200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr7:6485400-6486200	Weak transcription	Brain Germinal Matrix	brain
29	chr7:6485400-6486200	Weak transcription	Brain Hippocampus Middle	brain
30	chr7:6485400-6486200	Enhancers	Fetal Brain Female	brain
31	chr7:6485400-6486200	Weak transcription	Fetal Intestine Large	intestine
32	chr7:6485400-6486200	Weak transcription	Psoas Muscle	Psoas
33	chr7:6485400-6486200	Weak transcription	Thymus	Thymus
34	chr7:6485400-6486200	Weak transcription	HepG2	liver
35	chr7:6485400-6486400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr7:6485400-6486400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr7:6485400-6486400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr7:6485400-6486400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr7:6485400-6486400	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr7:6485400-6486400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr7:6485400-6486400	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr7:6485400-6486400	Weak transcription	Brain Substantia Nigra	brain
43	chr7:6485400-6486400	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr7:6485400-6486400	Weak transcription	Fetal Brain Male	brain
45	chr7:6485400-6486400	Weak transcription	Fetal Kidney	kidney
46	chr7:6485400-6486400	Weak transcription	Left Ventricle	heart
47	chr7:6485400-6486400	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr7:6485400-6486400	Weak transcription	Right Ventricle	heart
49	chr7:6485400-6486400	Weak transcription	Stomach Smooth Muscle	stomach
50	chr7:6485600-6486200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood

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