Variant report

Variant	rs55724017
Chromosome Location	chr1:172845975-172845976
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10489276	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10912488	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10912490	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10912491	0.81[EUR][1000 genomes]
rs12021711	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12037853	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12047983	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12136659	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12403628	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12411259	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12728265	0.89[EUR][1000 genomes]
rs12739009	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12748081	0.89[EUR][1000 genomes]
rs2157453	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2157454	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2187892	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2213742	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2213745	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35715673	0.89[EUR][1000 genomes]
rs4145468	0.81[EUR][1000 genomes]
rs4916198	0.85[EUR][1000 genomes]
rs4916283	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4916285	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6425143	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6425145	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6425146	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6425162	0.84[ASN][1000 genomes]
rs6661686	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6672776	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6673011	0.84[ASN][1000 genomes]
rs6699678	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs68143871	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7517810	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7527462	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9286879	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3587	chr1:172836950-172882218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172840600-172855200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links