Variant report

Variant	rs55724051
Chromosome Location	chr4:86404065-86404066
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10433935	1.00[AFR][1000 genomes]
rs72654051	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	esv3331664	chr4:86234879-86421961	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86399200-86409000	Weak transcription	Left Ventricle	heart
2	chr4:86399200-86412600	Weak transcription	Pancreas	Pancrea
3	chr4:86399400-86410400	Weak transcription	Right Atrium	heart
4	chr4:86400200-86409200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:86400200-86409600	Weak transcription	Fetal Muscle Leg	muscle
6	chr4:86400200-86410400	Weak transcription	Right Ventricle	heart
7	chr4:86401000-86407800	Weak transcription	NHDF-Ad	bronchial
8	chr4:86401000-86409200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:86401800-86407600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:86402200-86409600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:86402400-86404200	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr4:86403400-86404200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr4:86403400-86412400	Weak transcription	Primary B cells from cord blood	blood
14	chr4:86403600-86404200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr4:86403600-86404200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr4:86403600-86404200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr4:86403600-86405600	Strong transcription	HSMM	muscle
18	chr4:86403800-86405400	Genic enhancers	Primary B cells from peripheral blood	blood
19	chr4:86403800-86406600	Weak transcription	A549	lung
20	chr4:86403800-86407800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr4:86403800-86409600	Weak transcription	Gastric	stomach
22	chr4:86404000-86404200	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr4:86404000-86405800	Weak transcription	Spleen	Spleen
24	chr4:86404000-86409200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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