Variant report

Variant	rs55734325
Chromosome Location	chr1:94423453-94423454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11804053	1.00[AMR][1000 genomes]
rs17884580	1.00[AMR][1000 genomes]
rs17885147	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516137	chr1:94404238-94504545	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94422400-94425200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:94422400-94425800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr1:94422600-94425000	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr1:94422600-94426200	Weak transcription	Esophagus	oesophagus
5	chr1:94422600-94445000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:94422800-94423600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:94423000-94423600	Enhancers	HMEC	breast
8	chr1:94423000-94423600	Enhancers	NHEK	skin
9	chr1:94423000-94424000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:94423000-94424400	Enhancers	HepG2	liver
11	chr1:94423000-94427200	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr1:94423200-94423800	ZNF genes & repeats	Aorta	Aorta
13	chr1:94423400-94423600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:94423400-94423600	Enhancers	Pancreas	Pancrea
15	chr1:94423400-94424000	Enhancers	Liver	Liver
16	chr1:94423400-94426000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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