Variant report

Variant	rs55735208
Chromosome Location	chr11:17511780-17511781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11024302	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024306	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024307	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12281584	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294674	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36234278	0.97[EUR][1000 genomes]
rs56063548	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56070367	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56095800	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56130449	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56170308	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56361848	0.84[EUR][1000 genomes]
rs57520450	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58150842	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs985571	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17507800-17515800	Weak transcription	Gastric	stomach
2	chr11:17508800-17515600	Weak transcription	Fetal Intestine Large	intestine
3	chr11:17510600-17513200	Bivalent Enhancer	Fetal Muscle Leg	muscle
4	chr11:17511200-17526000	Weak transcription	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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