Variant report

Variant	rs55735302
Chromosome Location	chr3:23273594-23273595
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:23247004..23248744-chr3:23272999..23274643,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11915691	1.00[AMR][1000 genomes]
rs11915870	1.00[AMR][1000 genomes]
rs59513149	1.00[AMR][1000 genomes]
rs73821240	1.00[AMR][1000 genomes]
rs73821248	1.00[AMR][1000 genomes]
rs73821263	1.00[AMR][1000 genomes]
rs73821292	1.00[AMR][1000 genomes]
rs73821295	1.00[AMR][1000 genomes]
rs73823457	1.00[AMR][1000 genomes]
rs73823465	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23261000-23274400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr3:23261400-23278200	Weak transcription	Brain Angular Gyrus	brain
3	chr3:23265400-23282000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:23266200-23277800	Weak transcription	Fetal Thymus	thymus
5	chr3:23267600-23274400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:23269400-23274200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:23270600-23274400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:23270600-23278200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:23270600-23278400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr3:23271200-23276800	Weak transcription	Psoas Muscle	Psoas
11	chr3:23271200-23278200	Weak transcription	Right Ventricle	heart
12	chr3:23272600-23283000	Weak transcription	HMEC	breast
13	chr3:23273000-23274800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr3:23273000-23274800	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr3:23273200-23273800	ZNF genes & repeats	Primary B cells from cord blood	blood
16	chr3:23273200-23273800	Enhancers	Brain Substantia Nigra	brain
17	chr3:23273200-23274000	Enhancers	Left Ventricle	heart
18	chr3:23273200-23274000	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr3:23273200-23274600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:23273200-23274800	Enhancers	HSMMtube	muscle
21	chr3:23273400-23273600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr3:23273400-23273600	Enhancers	Esophagus	oesophagus
23	chr3:23273400-23273800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr3:23273400-23273800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr3:23273400-23273800	Enhancers	Colon Smooth Muscle	Colon
26	chr3:23273400-23273800	Enhancers	Right Atrium	heart
27	chr3:23273400-23274000	Enhancers	Ovary	ovary
28	chr3:23273400-23274400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:23273400-23274400	Weak transcription	Primary B cells from peripheral blood	blood
30	chr3:23273400-23274800	Enhancers	Aorta	Aorta
31	chr3:23273400-23274800	Enhancers	Brain Hippocampus Middle	brain
32	chr3:23273400-23274800	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr3:23273400-23274800	Enhancers	Rectal Smooth Muscle	rectum

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