Variant report

Variant	rs55737832
Chromosome Location	chr8:63316667-63316668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10957224	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11786913	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11985228	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11997596	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12542276	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12548819	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12548859	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1451835	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1451836	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1451851	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17821257	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1993125	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2053938	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2084799	0.82[AMR][1000 genomes]
rs2198220	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2351660	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2351663	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2351954	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs41433850	0.82[AMR][1000 genomes]
rs4454265	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55755287	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59909095	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62511508	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6996038	0.83[AMR][1000 genomes]
rs7000955	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7001218	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs718710	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7835100	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs958461	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019143	chr8:63142202-63390820	Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv890956	chr8:63251640-63346420	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1024863	chr8:63275987-63439650	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv539636	chr8:63275987-63439650	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv982137	chr8:63277579-63399979	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv890958	chr8:63278209-63327490	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv831339	chr8:63312449-63501127	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63314600-63316800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:63315200-63321200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr8:63316400-63317600	Strong transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:63316600-63317800	Strong transcription	Fetal Brain Female	brain
5	chr8:63316600-63318200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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