Variant report

Variant	rs55740367
Chromosome Location	chr11:75566357-75566358
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75524219..75527964-chr11:75564659..75570839,6	MCF-7	breast:
2	chr11:75551367..75555670-chr11:75561757..75566708,7	MCF-7	breast:
3	chr11:75541747..75543499-chr11:75565051..75567599,2	K562	blood:

Variant related genes	Relation type
ENSG00000198382	Chromatin interaction
ENSG00000255507	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11236561	0.89[AFR][1000 genomes]
rs12279369	1.00[EUR][1000 genomes]
rs12283986	1.00[EUR][1000 genomes]
rs17134361	1.00[EUR][1000 genomes]
rs17134375	1.00[EUR][1000 genomes]
rs2371370	1.00[EUR][1000 genomes]
rs2371373	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34113941	1.00[EUR][1000 genomes]
rs3862806	1.00[EUR][1000 genomes]
rs56216135	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56230849	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56280826	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57081953	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58443332	1.00[EUR][1000 genomes]
rs58509556	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60606258	1.00[EUR][1000 genomes]
rs7102067	1.00[EUR][1000 genomes]
rs7102544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7105260	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7106322	1.00[EUR][1000 genomes]
rs7115978	1.00[EUR][1000 genomes]
rs7118055	1.00[EUR][1000 genomes]
rs7121639	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7122125	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7122276	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7122386	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7122695	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7125495	1.00[EUR][1000 genomes]
rs7131141	1.00[EUR][1000 genomes]
rs73491729	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73491733	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73491734	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73491737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73491741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73504544	1.00[EUR][1000 genomes]
rs7928366	1.00[EUR][1000 genomes]
rs7933028	1.00[EUR][1000 genomes]
rs7934683	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7934862	1.00[EUR][1000 genomes]
rs7934895	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7937098	1.00[EUR][1000 genomes]
rs7939174	1.00[EUR][1000 genomes]
rs7948380	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7948526	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7948641	1.00[EUR][1000 genomes]
rs7949863	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv832212	chr11:75524993-75725623	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75535400-75579000	Weak transcription	Fetal Intestine Large	intestine
2	chr11:75535800-75573800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr11:75538600-75567600	Weak transcription	Placenta	Placenta
4	chr11:75538800-75591400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:75544000-75584000	Weak transcription	Small Intestine	intestine
6	chr11:75547400-75566400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:75547600-75600000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr11:75549800-75602800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:75551800-75569000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:75552000-75580000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:75553800-75600800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr11:75557400-75586800	Weak transcription	Ovary	ovary
13	chr11:75558400-75602800	Weak transcription	Fetal Muscle Trunk	muscle
14	chr11:75559800-75575600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr11:75560200-75579400	Weak transcription	Pancreas	Pancrea
16	chr11:75561200-75584200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr11:75561200-75584800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:75561200-75584800	Weak transcription	Lung	lung
19	chr11:75561400-75569400	Weak transcription	Liver	Liver
20	chr11:75561400-75578400	Weak transcription	Duodenum Mucosa	Duodenum
21	chr11:75561600-75567600	Weak transcription	Spleen	Spleen
22	chr11:75561600-75573400	Weak transcription	Left Ventricle	heart
23	chr11:75561800-75572000	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr11:75561800-75574200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr11:75561800-75576400	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr11:75562000-75573400	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr11:75562000-75586400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr11:75562200-75569400	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr11:75562200-75569600	Weak transcription	NHLF	lung
30	chr11:75562200-75569800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr11:75562200-75585800	Weak transcription	Fetal Brain Male	brain
32	chr11:75562200-75590800	Weak transcription	Thymus	Thymus
33	chr11:75562400-75567800	Weak transcription	Stomach Mucosa	stomach
34	chr11:75562400-75569400	Weak transcription	HSMM	muscle
35	chr11:75562400-75573400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:75562400-75579400	Weak transcription	Fetal Thymus	thymus
37	chr11:75562600-75566400	Weak transcription	Stomach Smooth Muscle	stomach
38	chr11:75562600-75569200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:75562600-75569800	Weak transcription	Brain Anterior Caudate	brain
40	chr11:75562600-75578400	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr11:75562600-75579000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr11:75562600-75580000	Weak transcription	Fetal Lung	lung
43	chr11:75562600-75584800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr11:75562600-75591400	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr11:75562600-75630400	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr11:75562800-75567600	Strong transcription	Primary B cells from peripheral blood	blood
47	chr11:75562800-75568400	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr11:75562800-75568800	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr11:75562800-75569200	Weak transcription	NHDF-Ad	bronchial
50	chr11:75562800-75569200	Weak transcription	Osteobl	bone

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