Variant report

Variant	rs55749920
Chromosome Location	chr1:210755241-210755242
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12040372	1.00[EUR][1000 genomes]
rs56136649	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58060889	1.00[EUR][1000 genomes]
rs61679127	1.00[EUR][1000 genomes]
rs6683486	1.00[EUR][1000 genomes]
rs6686046	1.00[EUR][1000 genomes]
rs74158918	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873149	chr1:210749312-210793972	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210752200-210761200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:210754600-210755400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:210754600-210755600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr1:210754600-210756400	Enhancers	Fetal Heart	heart
5	chr1:210754600-210756800	Enhancers	Fetal Thymus	thymus
6	chr1:210754600-210757600	Enhancers	Primary hematopoietic stem cells	blood
7	chr1:210754800-210756800	Enhancers	Thymus	Thymus
8	chr1:210754800-210758600	Enhancers	HSMMtube	muscle
9	chr1:210755200-210757000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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