Variant report
Variant | rs55750940 |
---|---|
Chromosome Location | chr5:16641235-16641236 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr5:16464742..16466448-chr5:16638890..16641335,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000173545 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10079706 | 1.00[AMR][1000 genomes] |
rs10475086 | 1.00[AMR][1000 genomes] |
rs56259725 | 1.00[AMR][1000 genomes] |
rs73755161 | 1.00[AMR][1000 genomes] |
rs73755170 | 1.00[AMR][1000 genomes] |
rs73755174 | 1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv881187 | chr5:16514269-16654960 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv436482 | chr5:16635711-16655705 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |