Variant report

Variant	rs55752209
Chromosome Location	chr7:101886661-101886662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101880453..101884084-chr7:101884489..101887289,4	K562	blood:
2	chr7:101459322..101461640-chr7:101884735..101887609,2	MCF-7	breast:
3	chr7:101885932..101887967-chr7:101892094..101894879,2	K562	blood:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction
ENSG00000264642	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12539258	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17498402	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2268030	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56076326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56078398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56293444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56377525	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62484935	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73187849	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73187850	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73187852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73187854	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9690066	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9691744	0.85[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101838400-101889400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:101846000-101904200	Weak transcription	Stomach Mucosa	stomach
3	chr7:101852400-101893600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:101852800-101897000	Weak transcription	NHEK	skin
5	chr7:101854400-101894800	Weak transcription	K562	blood
6	chr7:101858400-101897600	Weak transcription	Psoas Muscle	Psoas
7	chr7:101865000-101904200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:101866000-101892600	Weak transcription	Osteobl	bone
9	chr7:101866000-101896400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr7:101866800-101907600	Weak transcription	NH-A	brain
11	chr7:101867400-101898000	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr7:101867400-101898000	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr7:101867800-101900400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr7:101868000-101894000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr7:101869600-101887800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr7:101870000-101894200	Strong transcription	Fetal Thymus	thymus
17	chr7:101870200-101898000	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr7:101870400-101895800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr7:101871800-101891600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr7:101872400-101898800	Weak transcription	Brain Angular Gyrus	brain
21	chr7:101872400-101904000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr7:101872600-101886800	Strong transcription	Thymus	Thymus
23	chr7:101872600-101889600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr7:101872800-101892000	Weak transcription	Small Intestine	intestine
25	chr7:101873600-101894600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr7:101873600-101904000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr7:101875600-101894200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr7:101875600-101898000	Strong transcription	Dnd41	blood
29	chr7:101877600-101895400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr7:101878000-101894400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr7:101878600-101893400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr7:101878600-101895800	Weak transcription	HSMMtube	muscle
33	chr7:101878600-101896000	Weak transcription	HSMM	muscle
34	chr7:101878600-101896200	Weak transcription	Brain Anterior Caudate	brain
35	chr7:101880400-101886800	Strong transcription	Fetal Muscle Trunk	muscle
36	chr7:101880400-101898400	Strong transcription	Fetal Stomach	stomach
37	chr7:101880800-101887200	Strong transcription	Placenta	Placenta
38	chr7:101881800-101893800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr7:101882000-101886800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr7:101882000-101886800	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr7:101882000-101886800	Strong transcription	Brain Hippocampus Middle	brain
42	chr7:101882000-101886800	Strong transcription	Gastric	stomach
43	chr7:101882000-101887000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr7:101882000-101888400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr7:101882400-101886800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr7:101882600-101886800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr7:101882600-101886800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr7:101882600-101886800	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr7:101882600-101887000	Strong transcription	Stomach Smooth Muscle	stomach
50	chr7:101882600-101890200	Strong transcription	Duodenum Smooth Muscle	Duodenum

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