Variant report

Variant	rs55753840
Chromosome Location	chr11:70838678-70838679
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs17431746	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35136877	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55726773	0.91[EUR][1000 genomes]
rs55757613	0.83[EUR][1000 genomes]
rs56035448	0.91[EUR][1000 genomes]
rs56188890	1.00[ASN][1000 genomes]
rs56341503	0.91[EUR][1000 genomes]
rs58093994	0.91[EUR][1000 genomes]
rs58713366	0.84[EUR][1000 genomes]
rs60524701	0.90[EUR][1000 genomes]
rs66521164	0.91[EUR][1000 genomes]
rs66668954	0.85[EUR][1000 genomes]
rs7123599	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72957631	1.00[ASN][1000 genomes]
rs72957637	1.00[ASN][1000 genomes]
rs72957640	1.00[ASN][1000 genomes]
rs72957676	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72957677	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72957679	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72957686	0.92[EUR][1000 genomes]
rs72957688	0.92[EUR][1000 genomes]
rs72957690	0.91[EUR][1000 genomes]
rs72957691	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72957699	0.86[EUR][1000 genomes]
rs72959503	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72959507	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9888294	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70800600-70850800	Weak transcription	Right Atrium	heart
2	chr11:70821000-70842000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr11:70824000-70861600	Weak transcription	A549	lung
4	chr11:70827400-70851200	Weak transcription	Placenta	Placenta
5	chr11:70827600-70842200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:70832000-70839000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:70832000-70839000	Weak transcription	Fetal Stomach	stomach
8	chr11:70832000-70841400	Weak transcription	Fetal Intestine Large	intestine
9	chr11:70832200-70840600	Weak transcription	Pancreas	Pancrea
10	chr11:70832200-70843000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr11:70832200-70843000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:70832200-70843400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr11:70832200-70843400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr11:70832200-70848400	Weak transcription	Gastric	stomach
15	chr11:70832200-70860600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:70832200-70863600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr11:70832200-70864400	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr11:70832400-70842200	Weak transcription	Duodenum Mucosa	Duodenum
19	chr11:70835000-70839200	Weak transcription	HepG2	liver
20	chr11:70835400-70839200	Weak transcription	Liver	Liver
21	chr11:70835400-70842000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:70835400-70842800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:70837800-70843400	Strong transcription	Fetal Intestine Small	intestine

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