Variant report

Variant	rs55757636
Chromosome Location	chr19:56829207-56829208
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:56825352..56829856-chr19:56831358..56835885,6	K562	blood:
2	chr19:56824639..56829612-chr19:56829732..56835885,11	K562	blood:

Variant related genes	Relation type
ENSG00000266907	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11667517	1.00[ASN][1000 genomes]
rs11671109	1.00[ASN][1000 genomes]
rs11671946	1.00[ASN][1000 genomes]
rs11672540	1.00[ASN][1000 genomes]
rs2869161	1.00[ASN][1000 genomes]
rs35626174	1.00[ASN][1000 genomes]
rs56374537	1.00[ASN][1000 genomes]
rs66528019	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66827723	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7246987	1.00[ASN][1000 genomes]
rs7256716	1.00[ASN][1000 genomes]
rs7257664	1.00[ASN][1000 genomes]
rs7260439	1.00[ASN][1000 genomes]
rs73052169	1.00[ASN][1000 genomes]
rs73052170	1.00[ASN][1000 genomes]
rs73052176	1.00[ASN][1000 genomes]
rs73052195	1.00[ASN][1000 genomes]
rs8103677	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064371	chr19:56418215-56842450	ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
2	nsv1057316	chr19:56418215-56849458	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
3	nsv912516	chr19:56601298-56981382	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	93 gene(s)	inside rSNPs	diseases
4	nsv526325	chr19:56741186-56852035	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv949121	chr19:56754719-57591038	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
6	nsv1062341	chr19:56794070-57273332	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
7	nsv544094	chr19:56794070-57273332	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
8	nsv1056713	chr19:56799151-57265682	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
9	nsv544095	chr19:56799151-57265682	Strong transcription ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
10	nsv1058026	chr19:56799847-56833153	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
11	nsv1067261	chr19:56820571-56854916	Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:56827200-56829400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr19:56827200-56829800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr19:56827200-56832200	Weak transcription	Placenta	Placenta
4	chr19:56827200-56832400	Weak transcription	Lung	lung
5	chr19:56827200-56832600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr19:56827400-56829600	Weak transcription	HSMMtube	muscle
7	chr19:56827400-56831000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr19:56827400-56831000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr19:56827400-56832400	Weak transcription	Right Ventricle	heart
10	chr19:56827600-56829600	Enhancers	HepG2	liver
11	chr19:56827600-56829800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr19:56827600-56829800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr19:56827600-56829800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr19:56827600-56830200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr19:56827600-56830800	Weak transcription	Colonic Mucosa	Colon
16	chr19:56827600-56832200	Weak transcription	Right Atrium	heart
17	chr19:56827600-56832800	Weak transcription	Primary B cells from peripheral blood	blood
18	chr19:56827600-56832800	Weak transcription	Fetal Kidney	kidney
19	chr19:56827600-56835400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr19:56827800-56830000	Weak transcription	Primary B cells from cord blood	blood
21	chr19:56827800-56830000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr19:56827800-56830600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr19:56827800-56832000	Weak transcription	Left Ventricle	heart
24	chr19:56827800-56832600	Weak transcription	Fetal Heart	heart
25	chr19:56828400-56829600	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr19:56828800-56829400	Enhancers	Pancreas	Pancrea
27	chr19:56829000-56829400	Enhancers	Brain Substantia Nigra	brain
28	chr19:56829000-56837000	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr19:56829200-56829400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr19:56829200-56829400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr19:56829200-56829400	Enhancers	NHEK	skin
32	chr19:56829200-56829600	Enhancers	Brain Hippocampus Middle	brain
33	chr19:56829200-56831200	Weak transcription	K562	blood
34	chr19:56829200-56834200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links