Variant report

Variant	rs557587760
Chromosome Location	chr11:35261244-35261245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:35260075..35262709-chr11:35271623..35274355,2	K562	blood:
2	chr11:35256103..35261501-chr11:35384186..35388588,8	MCF-7	breast:
3	chr11:34938207..34939863-chr11:35260000..35262264,2	K562	blood:
4	chr11:35258928..35261277-chr11:35264057..35266573,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv541003	chr11:35122694-35261451	Genic enhancers Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv541004	chr11:35122694-35297414	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv897218	chr11:35241989-35261374	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv897220	chr11:35242907-35261374	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv897221	chr11:35242907-35265444	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv897222	chr11:35244044-35261374	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv972895	chr11:35259840-35266507	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv975098	chr11:35261190-35266507	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35247000-35263200	Weak transcription	HSMMtube	muscle
2	chr11:35254600-35264000	Weak transcription	Colon Smooth Muscle	Colon
3	chr11:35254600-35264000	Weak transcription	NHLF	lung
4	chr11:35255400-35266800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr11:35257400-35261800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr11:35258200-35263000	Weak transcription	HSMM	muscle
7	chr11:35258400-35263400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:35258400-35264000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:35258400-35267400	Weak transcription	Aorta	Aorta
10	chr11:35258400-35269000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:35258600-35261400	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr11:35258600-35263000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr11:35258600-35263200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:35258800-35264000	Weak transcription	NHDF-Ad	bronchial
15	chr11:35258800-35267400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:35259000-35263400	Weak transcription	Osteobl	bone
17	chr11:35259200-35270200	Weak transcription	Stomach Mucosa	stomach
18	chr11:35259800-35261600	Weak transcription	Thymus	Thymus
19	chr11:35259800-35261800	Weak transcription	Psoas Muscle	Psoas
20	chr11:35259800-35262800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr11:35260000-35263000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:35260000-35263800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr11:35260200-35261600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:35260200-35262800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr11:35260200-35262800	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr11:35260200-35263000	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr11:35260200-35263000	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr11:35260200-35263600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr11:35260400-35261400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr11:35260400-35261400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:35260400-35263000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr11:35260400-35263400	Weak transcription	Primary T cells from cord blood	blood
33	chr11:35260600-35262000	Weak transcription	Pancreas	Pancrea
34	chr11:35260600-35263600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:35260800-35261400	Enhancers	GM12878-XiMat	blood
36	chr11:35260800-35262600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr11:35260800-35262600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr11:35260800-35264000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr11:35260800-35270200	Weak transcription	Fetal Lung	lung
40	chr11:35261200-35263000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links