Variant report

Variant	rs55760841
Chromosome Location	chr14:56059806-56059807
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:56056459..56058091-chr14:56059741..56061406,2	MCF-7	breast:
2	chr14:56052261..56055376-chr14:56058166..56061190,4	K562	blood:
3	chr14:56057726..56060571-chr14:56061645..56063881,2	K562	blood:
4	chr14:55847857..55850141-chr14:56058173..56060941,2	MCF-7	breast:
5	chr14:56050224..56053643-chr14:56057156..56060698,4	MCF-7	breast:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10146870	0.86[ASN][1000 genomes]
rs10483644	0.93[EUR][1000 genomes]
rs10483649	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12432588	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12432887	0.91[EUR][1000 genomes]
rs12433592	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12434624	0.88[EUR][1000 genomes]
rs12434660	0.87[EUR][1000 genomes]
rs12434799	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12435643	0.86[EUR][1000 genomes]
rs12587700	0.82[EUR][1000 genomes]
rs12587705	0.86[EUR][1000 genomes]
rs12589864	0.86[EUR][1000 genomes]
rs12589867	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12590388	0.86[EUR][1000 genomes]
rs12590936	0.86[EUR][1000 genomes]
rs12882850	0.86[ASN][1000 genomes]
rs12885864	0.80[EUR][1000 genomes]
rs12888809	0.88[EUR][1000 genomes]
rs12895070	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12897227	0.88[ASN][1000 genomes]
rs17128610	0.92[AFR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17128614	0.92[AFR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17128655	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17128657	0.88[EUR][1000 genomes]
rs17128677	0.86[EUR][1000 genomes]
rs17128684	0.83[EUR][1000 genomes]
rs17128690	0.82[EUR][1000 genomes]
rs1951889	0.91[EUR][1000 genomes]
rs1951890	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2093800	0.88[ASN][1000 genomes]
rs2252189	0.86[EUR][1000 genomes]
rs2274076	0.91[EUR][1000 genomes]
rs2274078	0.88[EUR][1000 genomes]
rs2274079	0.88[EUR][1000 genomes]
rs2341889	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28458791	0.86[EUR][1000 genomes]
rs28703642	0.85[EUR][1000 genomes]
rs34023572	0.86[EUR][1000 genomes]
rs34111199	0.92[EUR][1000 genomes]
rs34118806	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34184813	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34408323	0.93[EUR][1000 genomes]
rs34548095	0.82[EUR][1000 genomes]
rs34697059	0.83[EUR][1000 genomes]
rs34709110	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34931260	0.92[AFR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35047443	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35094494	0.88[EUR][1000 genomes]
rs35420484	0.96[AFR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35451981	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35531912	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35535838	0.86[EUR][1000 genomes]
rs35560341	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35790844	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4457912	0.93[ASN][1000 genomes]
rs56229542	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60233569	0.82[EUR][1000 genomes]
rs61381603	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6573051	0.82[ASN][1000 genomes]
rs68127620	0.86[ASN][1000 genomes]
rs7154548	0.88[ASN][1000 genomes]
rs7156566	0.91[EUR][1000 genomes]
rs72719463	0.94[ASN][1000 genomes]
rs8003149	0.81[EUR][1000 genomes]
rs8006443	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8007183	0.89[ASN][1000 genomes]
rs8007832	0.84[ASN][1000 genomes]
rs8008764	0.89[ASN][1000 genomes]
rs8011252	0.88[ASN][1000 genomes]
rs8015588	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901960	chr14:55853724-56085130	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv901961	chr14:55853724-56101879	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv901962	chr14:55862956-56101879	Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv901963	chr14:55871452-56085130	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv901964	chr14:55871452-56101879	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
6	nsv1051564	chr14:55895610-56130788	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
7	nsv542103	chr14:55895610-56130788	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv901965	chr14:55976428-56101879	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56048200-56068400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:56048400-56068400	Weak transcription	Esophagus	oesophagus
3	chr14:56048400-56086000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:56048600-56060400	Weak transcription	Brain Substantia Nigra	brain
5	chr14:56048600-56070800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:56051200-56060200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr14:56051200-56066200	Weak transcription	Colonic Mucosa	Colon
8	chr14:56051200-56069000	Weak transcription	Primary B cells from cord blood	blood
9	chr14:56051400-56060200	Weak transcription	K562	blood
10	chr14:56051600-56061600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr14:56052000-56066200	Weak transcription	Pancreas	Pancrea
12	chr14:56052000-56068400	Weak transcription	Left Ventricle	heart
13	chr14:56052000-56080200	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr14:56053200-56069400	Weak transcription	Aorta	Aorta
15	chr14:56054000-56060400	Weak transcription	Ovary	ovary
16	chr14:56054400-56060200	Weak transcription	Fetal Kidney	kidney
17	chr14:56055000-56060200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr14:56055200-56066400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr14:56055200-56069200	Weak transcription	Primary T cells from cord blood	blood
20	chr14:56055400-56061600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr14:56055400-56061600	Weak transcription	Fetal Intestine Small	intestine
22	chr14:56055400-56065800	Weak transcription	Fetal Lung	lung
23	chr14:56055800-56060600	Weak transcription	NH-A	brain
24	chr14:56055800-56067200	Weak transcription	HSMMtube	muscle
25	chr14:56056000-56060200	Weak transcription	Osteobl	bone
26	chr14:56056000-56060400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr14:56056000-56060800	Weak transcription	Duodenum Mucosa	Duodenum
28	chr14:56056000-56067000	Weak transcription	NHDF-Ad	bronchial
29	chr14:56056200-56060400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr14:56056200-56060400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr14:56056200-56060600	Weak transcription	NHEK	skin
32	chr14:56056200-56067200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr14:56056200-56067200	Weak transcription	Adipose Nuclei	Adipose
34	chr14:56056200-56067200	Weak transcription	HMEC	breast
35	chr14:56056200-56068400	Weak transcription	Right Ventricle	heart
36	chr14:56056200-56076000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr14:56056400-56060200	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr14:56056400-56060400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr14:56056400-56060600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr14:56056400-56066000	Weak transcription	Psoas Muscle	Psoas
41	chr14:56056400-56067000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr14:56056400-56067000	Weak transcription	HSMM	muscle
43	chr14:56056400-56067200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr14:56056400-56067200	Weak transcription	NHLF	lung
45	chr14:56057200-56061200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr14:56057200-56065400	Enhancers	HepG2	liver
47	chr14:56057800-56060600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr14:56057800-56061000	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr14:56057800-56061000	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr14:56057800-56061000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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