Variant report

Variant	rs55764147
Chromosome Location	chr1:225315437-225315438
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1080260	0.82[EUR][1000 genomes]
rs10915779	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1506069	0.81[EUR][1000 genomes]
rs1506071	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1506072	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1506074	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1832540	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2128268	0.83[AMR][1000 genomes]
rs2449256	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2449258	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2449281	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2449304	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2449315	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2449320	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2449322	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2456336	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2456341	0.84[AMR][1000 genomes]
rs2456349	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2489298	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2489301	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2489303	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2489324	0.83[AMR][1000 genomes]
rs2489327	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2489343	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2489346	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2489348	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2489352	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2489353	0.81[AMR][1000 genomes]
rs2501100	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2501101	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2501110	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2501120	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2501133	0.85[AMR][1000 genomes]
rs2501147	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2501151	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2929626	0.83[AMR][1000 genomes]
rs2939363	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3101904	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3101910	0.85[AMR][1000 genomes]
rs3101916	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3101917	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3102106	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3102115	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3105564	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3105572	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3120989	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3120991	0.88[EUR][1000 genomes]
rs3120993	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3128654	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3128655	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3128657	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3128664	0.88[EUR][1000 genomes]
rs3128666	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3128667	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56339924	0.82[EUR][1000 genomes]
rs61211002	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61438284	0.82[EUR][1000 genomes]
rs61849768	0.81[AMR][1000 genomes]
rs6426051	0.84[EUR][1000 genomes]
rs6683938	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6686694	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6689915	0.84[EUR][1000 genomes]
rs6697382	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6702733	0.84[EUR][1000 genomes]
rs7521702	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7530659	0.80[AMR][1000 genomes]
rs7548138	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9663018	0.84[ASN][1000 genomes]
rs995613	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873225	chr1:225162060-225373936	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549262	chr1:225191852-225319898	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv549263	chr1:225202426-225319898	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv998899	chr1:225210813-225496353	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv524461	chr1:225304331-225347689	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv468205	chr1:225304971-225476025	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv549264	chr1:225304971-225476025	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225301800-225355800	Weak transcription	Pancreas	Pancrea
2	chr1:225313200-225315800	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links