Variant report

Variant	rs55764696
Chromosome Location	chr14:37582739-37582740
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:37580174..37584845-chr14:37588606..37592760,5	MCF-7	breast:
2	chr14:37578874..37583867-chr14:37583944..37587801,9	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11846664	1.00[EUR][1000 genomes]
rs17105856	1.00[EUR][1000 genomes]
rs17105876	1.00[EUR][1000 genomes]
rs17105909	1.00[EUR][1000 genomes]
rs17105921	1.00[EUR][1000 genomes]
rs17105928	1.00[EUR][1000 genomes]
rs17105938	1.00[EUR][1000 genomes]
rs17105941	1.00[EUR][1000 genomes]
rs17105991	1.00[EUR][1000 genomes]
rs17105999	1.00[EUR][1000 genomes]
rs17106020	1.00[EUR][1000 genomes]
rs17106194	1.00[EUR][1000 genomes]
rs17106252	1.00[EUR][1000 genomes]
rs17106300	1.00[EUR][1000 genomes]
rs17106370	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106427	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106428	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106431	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2093087	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2144319	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2180633	0.83[AMR][1000 genomes]
rs55987900	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56167909	1.00[EUR][1000 genomes]
rs56395950	1.00[EUR][1000 genomes]
rs57432181	1.00[EUR][1000 genomes]
rs57545427	1.00[EUR][1000 genomes]
rs60179583	1.00[EUR][1000 genomes]
rs60717098	1.00[EUR][1000 genomes]
rs60846053	1.00[EUR][1000 genomes]
rs60910364	1.00[EUR][1000 genomes]
rs61200961	1.00[EUR][1000 genomes]
rs7141866	1.00[EUR][1000 genomes]
rs7147703	1.00[EUR][1000 genomes]
rs73256266	1.00[EUR][1000 genomes]
rs73256270	1.00[EUR][1000 genomes]
rs73256271	1.00[EUR][1000 genomes]
rs73256284	1.00[EUR][1000 genomes]
rs73256290	1.00[EUR][1000 genomes]
rs73256295	1.00[EUR][1000 genomes]
rs73258212	1.00[EUR][1000 genomes]
rs73260317	1.00[EUR][1000 genomes]
rs73260392	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73264172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73266178	1.00[EUR][1000 genomes]
rs74045252	1.00[EUR][1000 genomes]
rs74045477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs761679	0.83[AMR][1000 genomes]
rs8009539	1.00[EUR][1000 genomes]
rs8009729	1.00[EUR][1000 genomes]
rs9671258	1.00[EUR][1000 genomes]
rs9672077	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1050174	chr14:37556357-37664143	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1043410	chr14:37556357-37671059	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv564347	chr14:37558794-37590164	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37578000-37584400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:37582400-37585400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr14:37582400-37587600	Enhancers	Hela-S3	cervix
4	chr14:37582400-37602800	Weak transcription	K562	blood
5	chr14:37582600-37582800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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