Variant report

Variant	rs55768795
Chromosome Location	chr7:122477502-122477503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10485388	0.81[ASN][1000 genomes]
rs11751061	0.81[ASN][1000 genomes]
rs11751771	0.83[ASN][1000 genomes]
rs11752920	0.81[EUR][1000 genomes]
rs11754164	0.83[ASN][1000 genomes]
rs11754468	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758445	0.81[EUR][1000 genomes]
rs11759133	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191462	0.81[ASN][1000 genomes]
rs12193999	0.83[ASN][1000 genomes]
rs12198091	0.81[ASN][1000 genomes]
rs12202674	0.83[ASN][1000 genomes]
rs16884519	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16884624	0.81[EUR][1000 genomes]
rs1817735	0.81[EUR][1000 genomes]
rs3898077	0.86[EUR][1000 genomes]
rs3923228	0.81[ASN][1000 genomes]
rs4537105	0.81[ASN][1000 genomes]
rs4546447	0.81[ASN][1000 genomes]
rs55784940	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55962148	0.86[EUR][1000 genomes]
rs56004196	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56020332	0.81[EUR][1000 genomes]
rs56138029	0.81[ASN][1000 genomes]
rs56232317	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56362119	0.81[ASN][1000 genomes]
rs67076726	0.81[EUR][1000 genomes]
rs72950543	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72950546	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72952371	0.81[ASN][1000 genomes]
rs72952395	0.81[ASN][1000 genomes]
rs72952398	0.81[ASN][1000 genomes]
rs72953763	0.81[EUR][1000 genomes]
rs72954314	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72957983	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72957986	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72957999	0.83[EUR][1000 genomes]
rs72959615	0.81[EUR][1000 genomes]
rs72959619	0.81[EUR][1000 genomes]
rs72962230	0.83[ASN][1000 genomes]
rs72964214	0.87[ASN][1000 genomes]
rs72967265	0.81[EUR][1000 genomes]
rs72967284	0.81[EUR][1000 genomes]
rs72967286	0.81[EUR][1000 genomes]
rs7755776	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7776273	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532181	chr7:122291571-122684719	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv532218	chr7:122360779-122934247	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1033520	chr7:122366544-122992937	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv949059	chr7:122386967-123066042	Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv948531	chr7:122386967-123191974	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv949180	chr7:122386967-123237070	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
9	nsv524192	chr7:122403421-123218522	Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
10	nsv498124	chr7:122412493-122986259	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122444200-122483800	Weak transcription	Left Ventricle	heart
2	chr7:122465400-122496000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:122470200-122483800	Weak transcription	Pancreas	Pancrea
4	chr7:122475200-122481000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr7:122475200-122481600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr7:122475200-122483600	Weak transcription	Gastric	stomach
7	chr7:122475200-122483600	Weak transcription	HepG2	liver

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