Variant report

Variant	rs557828117
Chromosome Location	chr9:15297191-15297192
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15293831..15297894-chr9:15305171..15308300,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155158	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031340	chr9:15163004-15332769	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2761505	chr9:15274373-15319613	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv892624	chr9:15283761-15415461	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv517975	chr9:15286446-15534070	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv613650	chr9:15296119-15378449	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv613651	chr9:15296355-15358157	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1015960	chr9:15296783-15380657	ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15287400-15303600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:15290800-15305600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:15290800-15306000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:15291200-15305600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr9:15294400-15306200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:15294600-15297600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr9:15294800-15297200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:15294800-15297600	Enhancers	Lung	lung
9	chr9:15295200-15297800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
10	chr9:15295400-15297200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr9:15295400-15297200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:15295400-15297200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:15295400-15297400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:15295600-15297400	Flanking Active TSS	Primary T cells from cord blood	blood
15	chr9:15295800-15297200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
16	chr9:15295800-15297200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
17	chr9:15295800-15297200	Flanking Active TSS	Dnd41	blood
18	chr9:15295800-15297600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
19	chr9:15295800-15298400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
20	chr9:15296000-15297200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
21	chr9:15296000-15297200	Active TSS	Colonic Mucosa	Colon
22	chr9:15296000-15297200	Active TSS	Duodenum Smooth Muscle	Duodenum
23	chr9:15296000-15297400	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr9:15296400-15297400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
25	chr9:15296400-15297400	Enhancers	Small Intestine	intestine
26	chr9:15296600-15297200	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr9:15296600-15297200	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr9:15296600-15297200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
29	chr9:15296600-15297200	Weak transcription	K562	blood
30	chr9:15296600-15297400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
31	chr9:15296600-15297400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
32	chr9:15296600-15297400	Enhancers	Spleen	Spleen
33	chr9:15296600-15297400	Enhancers	HSMMtube	muscle
34	chr9:15296600-15297600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr9:15296600-15297600	Enhancers	Fetal Muscle Leg	muscle
36	chr9:15296600-15299000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr9:15296600-15299400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr9:15296600-15301200	Enhancers	Primary B cells from peripheral blood	blood
39	chr9:15296800-15297200	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr9:15296800-15297200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr9:15296800-15297200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
42	chr9:15296800-15297200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
43	chr9:15296800-15297200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr9:15296800-15297200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr9:15296800-15297200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr9:15296800-15297200	Flanking Active TSS	Brain Hippocampus Middle	brain
47	chr9:15296800-15297200	Flanking Active TSS	Duodenum Mucosa	Duodenum
48	chr9:15296800-15297200	Weak transcription	Esophagus	oesophagus
49	chr9:15296800-15297200	Enhancers	Placenta	Placenta
50	chr9:15296800-15297200	Flanking Active TSS	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links