Variant report

Variant	rs55788918
Chromosome Location	chr11:10276378-10276379
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10770103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840375	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10840377	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11042601	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042609	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042615	0.83[EUR][1000 genomes]
rs11042618	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042623	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042627	1.00[ASN][1000 genomes]
rs11042632	0.83[EUR][1000 genomes]
rs11042641	0.85[EUR][1000 genomes]
rs11042683	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11042731	1.00[ASN][1000 genomes]
rs11599958	1.00[ASN][1000 genomes]
rs11600251	0.86[EUR][1000 genomes]
rs11600489	0.87[EUR][1000 genomes]
rs11606561	0.86[EUR][1000 genomes]
rs11607682	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607703	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360783	0.91[EUR][1000 genomes]
rs12362060	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12362938	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416695	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12417184	0.83[EUR][1000 genomes]
rs12418212	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418514	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418619	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420122	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12420640	1.00[ASN][1000 genomes]
rs12420734	0.84[EUR][1000 genomes]
rs12421096	0.84[EUR][1000 genomes]
rs12421179	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421931	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372808	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1442737	0.91[EUR][1000 genomes]
rs17359113	0.91[EUR][1000 genomes]
rs1822291	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1822292	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1867135	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2044782	1.00[ASN][1000 genomes]
rs2167169	1.00[ASN][1000 genomes]
rs2197171	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2403292	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28731164	0.83[EUR][1000 genomes]
rs34683105	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4271380	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4281477	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4345958	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4385889	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4450168	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4519084	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4643073	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4910095	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4910098	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55796222	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55923001	1.00[ASN][1000 genomes]
rs56853694	0.88[EUR][1000 genomes]
rs61878582	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878587	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878622	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878636	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889838	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891765	1.00[ASN][1000 genomes]
rs7104093	1.00[ASN][1000 genomes]
rs7123453	0.87[EUR][1000 genomes]
rs7924875	0.92[EUR][1000 genomes]
rs7931804	1.00[ASN][1000 genomes]
rs7935774	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7935934	0.94[EUR][1000 genomes]
rs7938491	0.89[EUR][1000 genomes]
rs7945980	0.94[EUR][1000 genomes]
rs7947306	0.85[EUR][1000 genomes]
rs7948215	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7950447	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10254400-10277400	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr11:10255600-10277200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr11:10255600-10279000	Weak transcription	Small Intestine	intestine
4	chr11:10255800-10277400	Weak transcription	HSMM	muscle
5	chr11:10259200-10280200	Weak transcription	A549	lung
6	chr11:10263600-10280400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:10263800-10280200	Weak transcription	Ovary	ovary
8	chr11:10264600-10277400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:10264600-10280400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:10264600-10280800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:10264800-10282800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:10268600-10276600	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr11:10268600-10300000	Weak transcription	Fetal Intestine Small	intestine
14	chr11:10268800-10276600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:10269000-10277200	Weak transcription	NHLF	lung
16	chr11:10269200-10276600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:10269800-10283000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:10271200-10277800	Weak transcription	Osteobl	bone
19	chr11:10272000-10276600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr11:10272000-10278000	Weak transcription	NHDF-Ad	bronchial
21	chr11:10273400-10278800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr11:10273600-10277800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr11:10273600-10278800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr11:10273600-10278800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr11:10273600-10280400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr11:10273800-10280800	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr11:10275600-10277400	Weak transcription	Aorta	Aorta
28	chr11:10275800-10276600	Weak transcription	Colon Smooth Muscle	Colon

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