Variant report

Variant	rs557891475
Chromosome Location	chr4:86655233-86655234
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86651967..86654284-chr4:86654909..86657180,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv829999	chr4:86500257-86666019	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv290889	chr4:86654235-86655789	Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2763373	chr4:86655128-86673695	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86647000-86655400	Weak transcription	Brain Angular Gyrus	brain
2	chr4:86647200-86658200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr4:86647800-86655600	Weak transcription	Small Intestine	intestine
4	chr4:86647800-86656600	Weak transcription	Brain Anterior Caudate	brain
5	chr4:86647800-86656600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr4:86647800-86662600	Weak transcription	Left Ventricle	heart
7	chr4:86647800-86662600	Weak transcription	Spleen	Spleen
8	chr4:86648400-86662600	Weak transcription	Pancreas	Pancrea
9	chr4:86650400-86662400	Weak transcription	Adipose Nuclei	Adipose
10	chr4:86650800-86656000	Weak transcription	HSMMtube	muscle
11	chr4:86651200-86655600	Weak transcription	HSMM	muscle
12	chr4:86653000-86655400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:86653000-86658600	Enhancers	Primary B cells from peripheral blood	blood
14	chr4:86653600-86655400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:86653600-86655400	Weak transcription	Ovary	ovary
16	chr4:86653800-86662200	Weak transcription	Fetal Muscle Leg	muscle
17	chr4:86654600-86655400	Enhancers	Colon Smooth Muscle	Colon
18	chr4:86654600-86656200	Enhancers	Primary B cells from cord blood	blood
19	chr4:86654600-86656400	Enhancers	Brain Substantia Nigra	brain
20	chr4:86654600-86657000	Enhancers	Brain Hippocampus Middle	brain
21	chr4:86654600-86659000	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr4:86654800-86655600	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr4:86654800-86655800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr4:86654800-86656200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr4:86655000-86655400	Weak transcription	Stomach Mucosa	stomach
26	chr4:86655000-86655400	Flanking Active TSS	GM12878-XiMat	blood
27	chr4:86655000-86655800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr4:86655000-86657000	Enhancers	Brain Cingulate Gyrus	brain
29	chr4:86655000-86664200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr4:86655200-86655800	Enhancers	Primary hematopoietic stem cells	blood
31	chr4:86655200-86656000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
32	chr4:86655200-86656200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr4:86655200-86656400	Enhancers	Fetal Heart	heart
34	chr4:86655200-86656400	Enhancers	HUVEC	blood vessel
35	chr4:86655200-86656600	Enhancers	NHDF-Ad	bronchial
36	chr4:86655200-86659400	Enhancers	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links