Variant report

Variant	rs55792543
Chromosome Location	chr9:17750650-17750651
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs55880611	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58255328	1.00[AMR][1000 genomes]
rs60626906	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61166306	1.00[AMR][1000 genomes]
rs73642203	1.00[AMR][1000 genomes]
rs73642205	1.00[AMR][1000 genomes]
rs73642206	0.92[AFR][1000 genomes]
rs73642209	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73642210	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73642309	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73642311	1.00[AMR][1000 genomes]
rs73642312	1.00[AMR][1000 genomes]
rs73642313	1.00[AMR][1000 genomes]
rs73645328	1.00[AMR][1000 genomes]
rs73645329	1.00[AMR][1000 genomes]
rs73645331	1.00[AMR][1000 genomes]
rs73645332	1.00[AMR][1000 genomes]
rs73645333	1.00[AMR][1000 genomes]
rs7852328	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892675	chr9:17694823-17790526	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1033892	chr9:17734224-17757581	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
6	nsv1034673	chr9:17739006-17916606	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1023089	chr9:17748811-17919574	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17750000-17750800	Enhancers	Brain Germinal Matrix	brain
2	chr9:17750200-17750800	Enhancers	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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