Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17855890	0.84[AMR][1000 genomes]
rs55873664	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55935463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55981206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56051740	0.84[AMR][1000 genomes]
rs56295858	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56299996	0.84[AMR][1000 genomes]
rs61929366	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61929388	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61929396	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61929398	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61929418	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61929423	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61930918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61930919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61930920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61930922	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61930923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61930924	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61930926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61931065	0.84[AMR][1000 genomes]
rs61931067	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1797806	chr12:86198935-86425608	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86290600-86293200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

Quick Search: