Variant report

Variant	rs557971390
Chromosome Location	chr15:76633253-76633254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr15:76632466-76635489	H1-hESC	embryonic stem cell:	n/a	chr15:76635415-76635425
2	RAD21	chr15:76633236-76633743	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr15:76628957-76633759	H1-neurons	neurons:	n/a	n/a
4	ELF1	chr15:76633201-76633748	GM12878	blood:	n/a	n/a
5	E2F6	chr15:76632411-76635905	H1-hESC	embryonic stem cell:	n/a	chr15:76635069-76635076 chr15:76634966-76634975 chr15:76635069-76635076 chr15:76634913-76634922 chr15:76635069-76635076 chr15:76635068-76635077 chr15:76635429-76635439 chr15:76635129-76635143 chr15:76635065-76635077 chr15:76633879-76633888
6	POLR2A	chr15:76631377-76633541	H1-neurons	neurons:	n/a	n/a
7	SUZ12	chr15:76628987-76637136	NT2-D1	testis:	n/a	n/a
8	EBF1	chr15:76633117-76633749	GM12878	blood:	n/a	n/a
9	CTCF	chr15:76633195-76633263	GM12892	blood:	n/a	n/a
10	CTCF	chr15:76633210-76633280	GM19239	blood:	n/a	n/a
11	YY1	chr15:76633233-76633719	H1-hESC	embryonic stem cell:	n/a	n/a
12	CTBP2	chr15:76631455-76635500	H1-hESC	embryonic stem cell:	n/a	n/a
13	SUZ12	chr15:76629195-76634787	H1-hESC	embryonic stem cell:	n/a	n/a
14	RUNX3	chr15:76632674-76633334	GM12878	blood:	n/a	n/a
15	POLR2A	chr15:76631898-76633726	GM18951	blood:	n/a	n/a
16	POLR2A	chr15:76633177-76633684	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:76601310..76610583-chr15:76618699..76634643,40	K562	blood:
2	chr15:76601574..76614388-chr15:76623703..76634730,38	K562	blood:
3	chr15:76627980..76632315-chr15:76633215..76636196,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000270036	TF binding region
ENSG00000159556	Chromatin interaction
ENSG00000140374	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904399	chr15:76622903-76646575	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv827391	chr15:76626571-76636327	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv525769	chr15:76632487-76661925	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76627400-76635400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr15:76627600-76634400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
3	chr15:76629000-76633600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
4	chr15:76629400-76633400	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
5	chr15:76630200-76641800	Weak transcription	A549	lung
6	chr15:76630400-76636400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr15:76630600-76635600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr15:76631200-76633400	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
9	chr15:76631400-76633600	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
10	chr15:76631600-76633600	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
11	chr15:76631600-76634800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
12	chr15:76631600-76636400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr15:76631800-76633600	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
14	chr15:76631800-76633600	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
15	chr15:76631800-76633600	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
16	chr15:76631800-76634400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
17	chr15:76631800-76634400	Strong transcription	K562	blood
18	chr15:76631800-76635600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
19	chr15:76632000-76633400	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
20	chr15:76632000-76633600	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
21	chr15:76632000-76633600	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
22	chr15:76632000-76633600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr15:76632000-76633600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr15:76632000-76633600	Flanking Bivalent TSS/Enh	Brain Substantia Nigra	brain
25	chr15:76632000-76634400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
26	chr15:76632000-76634400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr15:76632000-76634400	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
28	chr15:76632000-76634400	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
29	chr15:76632000-76634600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
30	chr15:76632000-76634600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
31	chr15:76632200-76633400	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
32	chr15:76632200-76633400	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
33	chr15:76632200-76633400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
34	chr15:76632200-76633400	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
35	chr15:76632200-76633400	Flanking Bivalent TSS/Enh	NHEK	skin
36	chr15:76632200-76633600	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
37	chr15:76632200-76633600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
38	chr15:76632200-76633600	Flanking Bivalent TSS/Enh	Primary T helper naive cells from peripheral blood	blood
39	chr15:76632200-76633600	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
40	chr15:76632200-76633600	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr15:76632200-76633600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr15:76632200-76633600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr15:76632200-76633600	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
44	chr15:76632200-76633600	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
45	chr15:76632200-76633600	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
46	chr15:76632200-76633800	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
47	chr15:76632200-76634200	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
48	chr15:76632200-76634200	Flanking Active TSS	Pancreas	Pancrea
49	chr15:76632200-76634400	Enhancers	Lung	lung
50	chr15:76632200-76634600	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links