Variant report

Variant	rs55802833
Chromosome Location	chr6:64539335-64539336
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs11753940	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11754041	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11754728	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11755149	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11755371	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11755458	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11755460	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11756799	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11756833	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11757713	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11757834	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11758365	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11758738	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1333096	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1333097	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1572115	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1681939	0.81[ASN][1000 genomes]
rs16894562	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1905593	0.80[ASN][1000 genomes]
rs1999579	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2008452	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2295184	0.89[EUR][1000 genomes]
rs34254442	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3757350	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3778647	0.86[ASN][1000 genomes]
rs3778648	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3800491	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3800492	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3800493	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3823446	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41271589	0.81[ASN][1000 genomes]
rs52546	0.94[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs55678650	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56008921	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56088368	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56172936	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56300303	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56302757	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56360535	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57217151	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57280061	0.85[ASN][1000 genomes]
rs57305989	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57319124	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57657484	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57888259	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57891105	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs58198138	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58247688	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58531869	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58669837	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59217667	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59674359	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60289981	0.87[ASN][1000 genomes]
rs60564402	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60622008	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60694786	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60949185	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61079290	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61094361	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61268055	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61369019	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61606312	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66462731	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66481681	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66520187	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66589841	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66752943	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66804407	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66882701	0.85[ASN][1000 genomes]
rs66960758	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66973400	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67044231	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67050101	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67069403	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67149738	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67169857	0.81[ASN][1000 genomes]
rs67342772	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67362704	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67632239	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67632720	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67674014	0.85[ASN][1000 genomes]
rs67722441	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67725686	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67727731	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67733371	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67767936	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67856629	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67890600	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67904296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67935772	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67939679	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67958548	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67959580	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs68128834	0.85[ASN][1000 genomes]
rs68132675	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs68167248	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs68177305	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6911092	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6933866	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72884634	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72884640	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72886339	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72886350	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72888273	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72890149	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7758431	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs958324	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024367	chr6:64453493-64615908	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1798215	chr6:64487748-64544220	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64538800-64539400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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