Variant report

Variant	rs55806342
Chromosome Location	chr10:52913020-52913021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr10:52912886-52913190	HepG2	liver:	n/a	chr10:52913038-52913049

Variant related genes	Relation type
PRKG1	TF binding region

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10490977	1.00[ASN][1000 genomes]
rs10996353	1.00[ASN][1000 genomes]
rs12257648	1.00[ASN][1000 genomes]
rs16914938	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16914978	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16914985	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16915151	1.00[EUR][1000 genomes]
rs16915184	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16915908	1.00[ASN][1000 genomes]
rs1904673	1.00[EUR][1000 genomes]
rs1904674	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1904680	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1904684	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1904685	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1904686	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41403246	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55713575	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55847608	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56142495	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56408019	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56822959	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59014714	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59140787	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59374151	1.00[ASN][1000 genomes]
rs59686966	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60646280	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60965856	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075809	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7092050	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7093618	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7094064	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100315	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73338462	1.00[ASN][1000 genomes]
rs74131784	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74131787	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74131789	0.95[EUR][1000 genomes]
rs74131799	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74131800	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133506	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133508	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133509	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133510	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133511	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133512	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133514	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133517	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133521	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133522	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133523	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133524	1.00[EUR][1000 genomes]
rs74133525	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133529	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133530	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133531	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133532	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133533	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133534	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133535	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133537	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907338	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913794	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915033	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917209	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917357	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9299471	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414837	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414843	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414845	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414846	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414847	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414850	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414851	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414852	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414853	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414855	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414856	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414857	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414858	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414859	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414860	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414861	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414863	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414864	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414865	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415735	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415743	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415747	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415758	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415759	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415760	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415761	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415764	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415765	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415766	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415768	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415769	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415771	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415772	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415773	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415774	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415775	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415776	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52895200-52924000	Weak transcription	Fetal Stomach	stomach
2	chr10:52895600-52916600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr10:52898000-52919600	Weak transcription	NHLF	lung
4	chr10:52901000-52915400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:52906000-52931200	Weak transcription	Fetal Muscle Leg	muscle
6	chr10:52907200-52916800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:52908000-52929600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr10:52908400-52916800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:52908400-52929600	Weak transcription	Aorta	Aorta
10	chr10:52910000-52931000	Weak transcription	Fetal Lung	lung
11	chr10:52910600-52942400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr10:52911000-52913600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:52912800-52913200	Enhancers	Colon Smooth Muscle	Colon
14	chr10:52913000-52913200	Enhancers	Pancreas	Pancrea
15	chr10:52913000-52922000	Weak transcription	Right Ventricle	heart

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