Variant report

Variant	rs55806776
Chromosome Location	chr2:181827848-181827849
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:181827830-181827929	ProgFib	skin:	n/a	n/a
2	MYC	chr2:181827762-181827919	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:181826154..181829123-chr2:181833838..181836698,3	K562	blood:
2	chr2:181826791..181830304-chr2:181843129..181846500,4	K562	blood:
3	chr2:181825689..181828314-chr2:181844292..181845970,2	MCF-7	breast:
4	chr2:181825164..181827909-chr2:181831566..181833281,2	K562	blood:
5	chr2:181826108..181828377-chr2:181844681..181846891,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55943951	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs55999220	0.93[EUR][1000 genomes]
rs56227816	0.85[AFR][1000 genomes]
rs56386819	0.93[EUR][1000 genomes]
rs6706756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7585125	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875476	chr2:181767757-181854997	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181827000-181828600	Enhancers	HMEC	breast
2	chr2:181827200-181828200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr2:181827200-181828600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:181827200-181828600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr2:181827200-181829000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:181827600-181828000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr2:181827600-181828000	Flanking Active TSS	NHEK	skin
8	chr2:181827800-181828000	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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