The 2.0 version of rSNPBase

Variant report

Variant rs558105387
Chromosome Location chr2:181938647-181938648
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:181904400-181945400 Weak transcription Left Ventricle heart
2 chr2:181911800-181940400 Weak transcription Primary T cells from cord blood blood
3 chr2:181912400-181941400 Weak transcription Esophagus oesophagus
4 chr2:181920800-181949800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr2:181922000-181942400 Weak transcription Fetal Intestine Large intestine
6 chr2:181926200-181939600 Weak transcription Rectal Mucosa Donor 29 rectum
7 chr2:181928600-181942200 Weak transcription Dnd41 blood
8 chr2:181928600-181943000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
9 chr2:181929000-181940400 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr2:181929000-181942200 Weak transcription Primary T helper cells PMA-I stimulated --
11 chr2:181930600-181938800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
12 chr2:181930800-181942200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
13 chr2:181932000-181940600 Weak transcription Primary B cells from cord blood blood
14 chr2:181932200-181942600 Weak transcription iPS-20b Cell Line embryonic stem cell
15 chr2:181932600-181938800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr2:181934400-181940000 Enhancers HUVEC blood vessel
17 chr2:181934800-181947800 Weak transcription Ovary ovary
18 chr2:181935000-181948000 Weak transcription Small Intestine intestine
19 chr2:181935200-181941200 Weak transcription Fetal Stomach stomach
20 chr2:181935400-181938800 Weak transcription HSMM muscle
21 chr2:181935400-181941800 Weak transcription HUES64 Cell Line embryonic stem cell
22 chr2:181935400-181942600 Weak transcription A549 lung
23 chr2:181935600-181942400 Weak transcription Primary hematopoietic stem cells short term culture blood
24 chr2:181935600-181943600 Weak transcription Fetal Heart heart
25 chr2:181935600-181946200 Weak transcription Primary hematopoietic stem cells blood
26 chr2:181935800-181938800 Weak transcription ES-I3 Cell Line embryonic stem cell
27 chr2:181936600-181939000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
28 chr2:181936800-181938800 Enhancers NHLF lung
29 chr2:181936800-181942000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
30 chr2:181937000-181939200 Enhancers Osteobl bone
31 chr2:181937000-181939400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr2:181937000-181939800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr2:181937200-181939000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
34 chr2:181937200-181939000 Enhancers NHDF-Ad bronchial
35 chr2:181937200-181939600 Enhancers HMEC breast
36 chr2:181937200-181939800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr2:181937200-181941000 Enhancers NHEK skin
38 chr2:181937400-181938800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
39 chr2:181937400-181938800 Enhancers Fetal Brain Male brain
40 chr2:181937400-181945600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
41 chr2:181937600-181941200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr2:181937600-181942200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
43 chr2:181937800-181939800 Weak transcription Right Ventricle heart
44 chr2:181937800-181942000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
45 chr2:181937800-181949600 Weak transcription HSMMtube muscle
46 chr2:181938200-181939200 Enhancers NH-A brain
47 chr2:181938200-181939600 Enhancers Breast Myoepithelial Primary Cells Breast
48 chr2:181938200-181939600 Enhancers Muscle Satellite Cultured Cells --
49 chr2:181938200-181939800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
50 chr2:181938200-181940400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015