Variant report

Variant	rs558264530
Chromosome Location	chr10:52500470-52500471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52382538..52386733-chr10:52497918..52501112,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198964	Chromatin interaction
ENSG00000226200	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895393	chr10:52413720-52530819	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1035197	chr10:52446582-52622349	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1825222	chr10:52477544-52527856	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv948008	chr10:52500270-52536321	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52498800-52500600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:52498800-52500600	Active TSS	HSMM	muscle
3	chr10:52498800-52500800	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr10:52499000-52500600	Active TSS	H9 Cell Line	embryonic stem cell
5	chr10:52499000-52500600	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr10:52499000-52500600	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr10:52499000-52500600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:52499000-52500600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:52499000-52500600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:52499000-52500600	Active TSS	Primary B cells from cord blood	blood
11	chr10:52499000-52500600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr10:52499000-52500600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr10:52499000-52500600	Active TSS	Brain Angular Gyrus	brain
14	chr10:52499000-52500600	Active TSS	Brain Anterior Caudate	brain
15	chr10:52499000-52500600	Active TSS	Brain Hippocampus Middle	brain
16	chr10:52499000-52500600	Active TSS	Brain Inferior Temporal Lobe	brain
17	chr10:52499000-52500600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:52499000-52500600	Active TSS	Fetal Kidney	kidney
19	chr10:52499000-52500600	Active TSS	Psoas Muscle	Psoas
20	chr10:52499000-52500600	Active TSS	Rectal Smooth Muscle	rectum
21	chr10:52499000-52500600	Active TSS	Right Ventricle	heart
22	chr10:52499000-52500600	Active TSS	A549	lung
23	chr10:52499000-52500600	Active TSS	GM12878-XiMat	blood
24	chr10:52499000-52500600	Active TSS	NHDF-Ad	bronchial
25	chr10:52499000-52500600	Active TSS	NHLF	lung
26	chr10:52499000-52500800	Active TSS	ES-I3 Cell Line	embryonic stem cell
27	chr10:52499000-52500800	Active TSS	H1 Cell Line	embryonic stem cell
28	chr10:52499000-52500800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr10:52499000-52500800	Active TSS	HUES64 Cell Line	embryonic stem cell
30	chr10:52499000-52500800	Active TSS	iPS-18 Cell Line	embryonic stem cell
31	chr10:52499000-52500800	Active TSS	iPS-20b Cell Line	embryonic stem cell
32	chr10:52499000-52500800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:52499000-52500800	Active TSS	Pancreatic Islets	Pancreatic Islet
34	chr10:52499200-52500600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr10:52499200-52500600	Active TSS	Breast Myoepithelial Primary Cells	Breast
36	chr10:52499200-52500600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr10:52499200-52500600	Active TSS	Fetal Intestine Small	intestine
38	chr10:52499200-52500600	Active TSS	Hela-S3	cervix
39	chr10:52499400-52500600	Active TSS	Cortex derived primary cultured neurospheres	brain
40	chr10:52499400-52500600	Active TSS	Duodenum Mucosa	Duodenum
41	chr10:52499400-52500600	Active TSS	Fetal Stomach	stomach
42	chr10:52499400-52500800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr10:52499400-52501000	Active TSS	Stomach Smooth Muscle	stomach
44	chr10:52499600-52500600	Active TSS	NH-A	brain
45	chr10:52500000-52500600	Active TSS	Adipose Nuclei	Adipose
46	chr10:52500000-52500600	Active TSS	HMEC	breast
47	chr10:52500200-52500600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr10:52500200-52500600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr10:52500200-52500600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
50	chr10:52500200-52500600	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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