Variant report

Variant	rs558309715
Chromosome Location	chr4:120328680-120328681
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr4:120328108-120328957	HepG2	liver:	n/a	chr4:120328580-120328587

Variant related genes	Relation type
ENSG00000260091	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv1012868	chr4:120014630-120464880	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv537232	chr4:120014630-120464880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv428769	chr4:120205572-120363323	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv879841	chr4:120244085-120388406	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv879842	chr4:120244085-120424087	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv427694	chr4:120250511-120501728	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	esv2538163	chr4:120252854-120388678	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv966315	chr4:120323446-120375667	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv879843	chr4:120326323-120502461	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
11	nsv964147	chr4:120326556-120352949	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv3382283	chr4:120328454-120331452	Weak transcription Genic enhancers Strong transcription Enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120318000-120333400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:120324200-120342200	Weak transcription	Pancreas	Pancrea
3	chr4:120324600-120330400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:120325000-120329800	Weak transcription	Liver	Liver
5	chr4:120325000-120331400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr4:120325000-120331800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:120325000-120341200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:120325200-120334200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr4:120326600-120329000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr4:120326600-120329800	Weak transcription	Fetal Stomach	stomach
11	chr4:120326600-120331600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr4:120326600-120334400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr4:120326600-120360800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:120326800-120331600	Weak transcription	Fetal Muscle Leg	muscle
15	chr4:120327000-120329800	Weak transcription	Gastric	stomach
16	chr4:120327200-120335200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:120327200-120339200	Weak transcription	Esophagus	oesophagus
18	chr4:120327200-120361400	Weak transcription	Fetal Intestine Small	intestine
19	chr4:120327800-120332000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr4:120328000-120329600	Enhancers	Placenta	Placenta
21	chr4:120328000-120330200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr4:120328200-120329800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr4:120328200-120329800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr4:120328600-120329000	Strong transcription	Lung	lung

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