Variant report

Variant	rs55834429
Chromosome Location	chr11:35341679-35341680
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35316062..35317764-chr11:35341517..35344402,2	MCF-7	breast:
2	chr11:35338073..35340273-chr11:35341341..35343774,3	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10444271	0.81[AMR][1000 genomes]
rs10836373	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11033057	0.81[AMR][1000 genomes]
rs11033060	0.81[AMR][1000 genomes]
rs11033071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11033080	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11033083	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11033089	0.89[EUR][1000 genomes]
rs11033090	0.89[EUR][1000 genomes]
rs12418812	0.81[AMR][1000 genomes]
rs12420201	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12574069	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16927292	0.81[AMR][1000 genomes]
rs2273687	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2901534	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3794087	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3794097	0.81[AMR][1000 genomes]
rs3847612	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3847613	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3847620	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3891872	0.81[AMR][1000 genomes]
rs3911898	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3925877	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4083481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41525047	0.81[AMR][1000 genomes]
rs4237664	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4582949	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4755397	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4755398	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4756210	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4756211	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4756219	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4756220	0.89[EUR][1000 genomes]
rs4756221	0.91[EUR][1000 genomes]
rs55709010	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56028027	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7114383	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72076042	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7934047	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35324400-35343200	Weak transcription	Gastric	stomach
2	chr11:35327000-35343400	Weak transcription	Fetal Lung	lung
3	chr11:35332000-35343800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:35335600-35341800	Weak transcription	Brain Anterior Caudate	brain
5	chr11:35335600-35342800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr11:35335600-35343200	Weak transcription	Left Ventricle	heart
7	chr11:35335600-35343200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr11:35338000-35342400	Weak transcription	HSMM	muscle
9	chr11:35338000-35343000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:35338200-35343400	Weak transcription	Osteobl	bone
11	chr11:35338600-35343200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:35339000-35341800	Weak transcription	Brain Germinal Matrix	brain
13	chr11:35339000-35343400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr11:35339000-35358000	Weak transcription	HepG2	liver
15	chr11:35339200-35344200	Weak transcription	Psoas Muscle	Psoas
16	chr11:35339800-35342000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr11:35340000-35342200	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr11:35340400-35342000	Enhancers	Primary T cells from cord blood	blood
19	chr11:35340400-35348400	Enhancers	NHDF-Ad	bronchial
20	chr11:35340600-35342400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:35340600-35342400	Enhancers	Brain Substantia Nigra	brain
22	chr11:35340600-35344800	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr11:35340600-35345800	Enhancers	Pancreas	Pancrea
24	chr11:35340600-35347600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:35340800-35342200	Enhancers	HSMMtube	muscle
26	chr11:35340800-35342800	Weak transcription	Adipose Nuclei	Adipose
27	chr11:35340800-35344800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr11:35341000-35342000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:35341000-35342200	Weak transcription	Brain Hippocampus Middle	brain
30	chr11:35341000-35343400	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr11:35341000-35344200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr11:35341200-35343200	Weak transcription	Fetal Brain Male	brain
33	chr11:35341200-35343200	Weak transcription	NH-A	brain
34	chr11:35341200-35343200	Weak transcription	NHLF	lung
35	chr11:35341200-35343400	Weak transcription	Right Atrium	heart
36	chr11:35341200-35344000	Weak transcription	Stomach Smooth Muscle	stomach
37	chr11:35341200-35344400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr11:35341200-35351200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr11:35341200-35351400	Weak transcription	Brain Cingulate Gyrus	brain
40	chr11:35341400-35341800	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr11:35341400-35341800	Weak transcription	Fetal Brain Female	brain
42	chr11:35341400-35343600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr11:35341400-35343600	Weak transcription	GM12878-XiMat	blood
44	chr11:35341400-35346200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr11:35341400-35349400	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr11:35341400-35350200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr11:35341400-35351400	Weak transcription	Primary B cells from peripheral blood	blood
48	chr11:35341600-35342000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr11:35341600-35342000	Weak transcription	Brain Angular Gyrus	brain

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