Variant report

Variant	rs55837858
Chromosome Location	chr14:56276668-56276669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10134507	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10138273	0.82[AMR][1000 genomes]
rs11620875	0.84[EUR][1000 genomes]
rs11621835	0.81[EUR][1000 genomes]
rs11622627	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11622641	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11622710	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11624167	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11624516	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11625571	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11625869	0.82[EUR][1000 genomes]
rs11626057	0.81[EUR][1000 genomes]
rs11627629	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11628040	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12890121	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12894971	0.80[EUR][1000 genomes]
rs17253841	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17832467	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1999705	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1999706	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2105058	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2152287	0.83[EUR][1000 genomes]
rs2184561	0.82[AMR][1000 genomes]
rs2342594	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2342595	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34096981	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34421003	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34540577	0.82[EUR][1000 genomes]
rs34663121	0.80[EUR][1000 genomes]
rs35290945	0.81[EUR][1000 genomes]
rs35527253	0.81[EUR][1000 genomes]
rs35559254	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36096896	0.82[EUR][1000 genomes]
rs36149160	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36188950	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4601950	0.81[EUR][1000 genomes]
rs55788205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57658601	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61975563	0.82[EUR][1000 genomes]
rs61975579	0.81[EUR][1000 genomes]
rs61977780	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61977781	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61977782	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61977785	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs999817	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832804	chr14:56083850-56277632	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56274600-56284400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:56274800-56278400	Weak transcription	Brain Substantia Nigra	brain
3	chr14:56275200-56280400	Weak transcription	Hela-S3	cervix
4	chr14:56275200-56280800	Weak transcription	Stomach Mucosa	stomach
5	chr14:56275200-56281600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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