Variant report

Variant	rs558420868
Chromosome Location	chr13:76610690-76610691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832649	chr13:76424872-76657891	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1054431	chr13:76460431-76885094	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541837	chr13:76460431-76885094	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2483877	chr13:76608302-76613420	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv471735	chr13:76608545-76612872	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
6	esv2036920	chr13:76608675-76612915	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	nsv9089	chr13:76608693-76611897	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3518953	chr13:76608702-76612872	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3518964	chr13:76608863-76612759	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv13831	chr13:76609091-76612717	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv3693151	chr13:76610127-76612357	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	nsv818981	chr13:76610127-76612357	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv2421663	chr13:76610127-76612755	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
14	nsv516991	chr13:76610127-76634901	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv455988	chr13:76610561-76662923	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv562363	chr13:76610561-76662923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76608000-76612000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr13:76609600-76611000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr13:76609600-76613800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr13:76609800-76610800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr13:76609800-76610800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr13:76609800-76611000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr13:76610400-76611400	Enhancers	K562	blood
8	chr13:76610400-76611600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr13:76610600-76611400	Enhancers	Brain Anterior Caudate	brain
10	chr13:76610600-76611600	Enhancers	Fetal Lung	lung
11	chr13:76610600-76611800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr13:76610600-76612400	Enhancers	Fetal Thymus	thymus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links