Variant report

Variant	rs55855906
Chromosome Location	chr14:37564981-37564982
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:37560763..37563483-chr14:37564350..37566033,2	MCF-7	breast:
2	chr14:37563198..37565090-chr14:38061386..38063484,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000129514	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10139302	0.87[ASN][1000 genomes]
rs10483487	0.87[ASN][1000 genomes]
rs10483488	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12100470	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12101262	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17106324	0.87[ASN][1000 genomes]
rs17106327	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17106328	0.87[ASN][1000 genomes]
rs17106343	0.87[ASN][1000 genomes]
rs17106358	0.87[ASN][1000 genomes]
rs17106368	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17106374	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17106381	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17106401	0.87[ASN][1000 genomes]
rs17106410	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17106412	0.85[ASN][1000 genomes]
rs17106437	0.85[ASN][1000 genomes]
rs1955759	0.87[ASN][1000 genomes]
rs2180094	0.87[ASN][1000 genomes]
rs2415387	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4906569	0.90[ASN][1000 genomes]
rs4906577	0.92[ASN][1000 genomes]
rs4906593	0.87[ASN][1000 genomes]
rs58398434	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs60439332	0.87[ASN][1000 genomes]
rs60853724	0.87[ASN][1000 genomes]
rs61200961	0.84[AFR][1000 genomes]
rs66496057	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs66862591	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs67441823	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7151756	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72669535	0.92[ASN][1000 genomes]
rs72669537	0.97[ASN][1000 genomes]
rs72669543	0.87[ASN][1000 genomes]
rs72669551	0.87[ASN][1000 genomes]
rs72669558	0.87[ASN][1000 genomes]
rs72669566	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1050174	chr14:37556357-37664143	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1043410	chr14:37556357-37671059	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv564347	chr14:37558794-37590164	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37561400-37568000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links