Variant report

Variant	rs55867601
Chromosome Location	chr14:65695347-65695348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:65694309..65696464-chr14:65814851..65817845,2	MCF-7	breast:
2	chr14:65694009..65696273-chr14:65703311..65706029,2	K562	blood:
3	chr14:65694260..65697862-chr14:65826001..65829124,3	MCF-7	breast:
4	chr14:65695112..65697010-chr14:65821133..65822947,2	MCF-7	breast:
5	chr14:64969629..64971559-chr14:65694755..65697380,2	MCF-7	breast:
6	chr14:65693998..65695540-chr14:65823003..65824928,3	MCF-7	breast:
7	chr14:65692548..65695388-chr14:65738784..65741190,2	MCF-7	breast:
8	chr14:65682951..65699539-chr14:65874873..65882779,51	MCF-7	breast:
9	chr14:65646236..65649201-chr14:65694087..65695699,2	MCF-7	breast:
10	chr14:65692867..65695461-chr14:65904405..65906189,2	MCF-7	breast:
11	chr14:65685385..65700060-chr14:65874568..65884730,76	MCF-7	breast:
12	chr14:65693679..65698667-chr14:65701405..65705460,7	MCF-7	breast:
13	chr14:65689123..65699940-chr14:65718655..65726829,32	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000258878	Chromatin interaction
ENSG00000126804	Chromatin interaction
ENSG00000033170	Chromatin interaction
ENSG00000089775	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1123493	0.88[EUR][1000 genomes]
rs17102508	0.86[ASN][1000 genomes]
rs55722250	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55890029	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56116751	0.88[EUR][1000 genomes]
rs58250564	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989800	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989801	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989804	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61989805	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7141109	1.00[ASN][1000 genomes]
rs7153564	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155037	0.89[EUR][1000 genomes]
rs7159202	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv564933	chr14:65667546-65710580	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65688200-65696400	Enhancers	Primary B cells from peripheral blood	blood
2	chr14:65689400-65696200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr14:65690000-65696600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr14:65691000-65696400	Enhancers	Primary B cells from cord blood	blood
5	chr14:65691000-65696400	Enhancers	Brain Substantia Nigra	brain
6	chr14:65691200-65696400	Enhancers	Fetal Intestine Large	intestine
7	chr14:65691200-65696600	Enhancers	Placenta	Placenta
8	chr14:65691200-65696600	Enhancers	Stomach Mucosa	stomach
9	chr14:65691400-65696200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr14:65691400-65696400	Enhancers	Fetal Intestine Small	intestine
11	chr14:65691400-65696400	Enhancers	Pancreas	Pancrea
12	chr14:65691400-65697600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr14:65691600-65696200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr14:65691800-65696200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr14:65691800-65696200	Weak transcription	Thymus	Thymus
16	chr14:65691800-65698600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr14:65692000-65696000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr14:65692000-65696200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr14:65692200-65695400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr14:65692200-65695800	Weak transcription	Fetal Brain Female	brain
21	chr14:65692200-65696200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr14:65692200-65696200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr14:65692200-65696200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr14:65692200-65696200	Weak transcription	Fetal Brain Male	brain
25	chr14:65692200-65696200	Weak transcription	Fetal Stomach	stomach
26	chr14:65692200-65696400	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr14:65692200-65696600	Weak transcription	Spleen	Spleen
28	chr14:65692400-65696000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr14:65692400-65696000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr14:65692400-65696400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr14:65692600-65695600	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr14:65692600-65696200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr14:65692800-65695400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr14:65692800-65696000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr14:65692800-65696200	Weak transcription	Primary hematopoietic stem cells	blood
36	chr14:65692800-65696600	Enhancers	Small Intestine	intestine
37	chr14:65693000-65696200	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr14:65693000-65696200	Weak transcription	Fetal Muscle Leg	muscle
39	chr14:65693000-65696200	Weak transcription	Fetal Thymus	thymus
40	chr14:65693000-65696400	Weak transcription	Lung	lung
41	chr14:65693000-65696400	Weak transcription	Right Ventricle	heart
42	chr14:65693200-65695400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr14:65693200-65695800	Weak transcription	Colonic Mucosa	Colon
44	chr14:65693200-65696000	Weak transcription	Right Atrium	heart
45	chr14:65693200-65696400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr14:65693200-65696400	Weak transcription	Left Ventricle	heart
47	chr14:65693400-65696200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr14:65693400-65696600	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr14:65693400-65696600	Weak transcription	Fetal Lung	lung
50	chr14:65693400-65696800	Weak transcription	Dnd41	blood

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