Variant report

Variant	rs558684857
Chromosome Location	chr7:138146251-138146252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:135241103..135243857-chr7:138144835..138146589,2	K562	blood:
2	chr6:27777294..27779689-chr7:138144779..138146981,2	MCF-7	breast:
3	chr17:56735218..56737807-chr7:138145782..138147495,2	MCF-7	breast:
4	chr7:138145066..138146985-chr7:138197776..138200513,2	MCF-7	breast:
5	chr7:138145878..138147701-chr7:138231100..138232665,2	K562	blood:
6	chr7:138144628..138146925-chr7:138348716..138351288,3	MCF-7	breast:
7	chr7:138145107..138147351-chr7:148578441..148580863,2	K562	blood:
8	chr7:138143601..138146619-chr7:138166848..138169714,4	K562	blood:
9	chr7:137684812..137687576-chr7:138144415..138146987,3	K562	blood:
10	chr7:138145200..138147441-chr7:148394803..148397416,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000203813	Chromatin interaction
ENSG00000122779	Chromatin interaction
ENSG00000106462	Chromatin interaction
ENSG00000273314	Chromatin interaction
ENSG00000122787	Chromatin interaction
ENSG00000182158	Chromatin interaction
ENSG00000155561	Chromatin interaction
ENSG00000055130	Chromatin interaction
ENSG00000239123	Chromatin interaction
ENSG00000202077	Chromatin interaction
ENSG00000157703	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	esv3329035	chr7:138144237-138146785	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138143400-138148400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:138143600-138146600	Active TSS	H1 Cell Line	embryonic stem cell
3	chr7:138143600-138148000	Active TSS	H9 Cell Line	embryonic stem cell
4	chr7:138143600-138148000	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr7:138143600-138148000	Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr7:138143600-138149000	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr7:138143600-138150200	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr7:138143800-138146400	Active TSS	NH-A	brain
9	chr7:138143800-138147000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:138143800-138147400	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr7:138143800-138148000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:138144000-138146400	Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr7:138144000-138146400	Active TSS	Brain Anterior Caudate	brain
14	chr7:138144000-138146400	Active TSS	Monocytes-CD14+_RO01746	blood
15	chr7:138144000-138147400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr7:138144200-138146400	Active TSS	Duodenum Smooth Muscle	Duodenum
17	chr7:138144200-138146400	Active TSS	Fetal Lung	lung
18	chr7:138144200-138146600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr7:138144200-138146600	Active TSS	Primary hematopoietic stem cells short term culture	blood
20	chr7:138144200-138146600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr7:138144200-138146600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr7:138144200-138146600	Active TSS	Brain Hippocampus Middle	brain
23	chr7:138144200-138146600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
24	chr7:138144200-138146600	Active TSS	Fetal Muscle Leg	muscle
25	chr7:138144200-138146600	Active TSS	Fetal Thymus	thymus
26	chr7:138144200-138146600	Active TSS	Skeletal Muscle Female	skeletal muscle
27	chr7:138144200-138146600	Active TSS	HUVEC	blood vessel
28	chr7:138144200-138146600	Active TSS	K562	blood
29	chr7:138144200-138146600	Active TSS	NHEK	skin
30	chr7:138144200-138146800	Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr7:138144200-138146800	Active TSS	A549	lung
32	chr7:138144200-138147000	Active TSS	Fetal Intestine Small	intestine
33	chr7:138144200-138147000	Active TSS	Fetal Kidney	kidney
34	chr7:138144200-138147000	Active TSS	Rectal Smooth Muscle	rectum
35	chr7:138144200-138147000	Active TSS	Right Ventricle	heart
36	chr7:138144200-138147000	Active TSS	HSMMtube	muscle
37	chr7:138144200-138147000	Active TSS	NHDF-Ad	bronchial
38	chr7:138144200-138147000	Active TSS	NHLF	lung
39	chr7:138144200-138147400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr7:138144200-138147400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr7:138144200-138147400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr7:138144200-138147600	Active TSS	Brain Germinal Matrix	brain
43	chr7:138144200-138147600	Active TSS	Fetal Brain Female	brain
44	chr7:138144200-138147800	Active TSS	Cortex derived primary cultured neurospheres	brain
45	chr7:138144200-138148000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
46	chr7:138144200-138148000	Active TSS	GM12878-XiMat	blood
47	chr7:138144400-138146400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr7:138144400-138146600	Active TSS	Breast Myoepithelial Primary Cells	Breast
49	chr7:138144400-138146600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr7:138144400-138146600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood

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