Variant report

Variant	rs558685147
Chromosome Location	chr19:43037311-43037312
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:43037184-43037364	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
CEACAM1	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526186	chr19:42676481-43203507	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
2	esv2422471	chr19:42733141-43669485	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
3	esv2422468	chr19:42991289-43669027	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1057390	chr19:43003323-43173028	Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv11884	chr19:43035285-43037914	Weak transcription Enhancers Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
6	nsv482597	chr19:43037214-43222644	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:43033600-43038400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr19:43033600-43043000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr19:43033600-43043800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr19:43033600-43044200	Weak transcription	Gastric	stomach
5	chr19:43033800-43037600	Weak transcription	Liver	Liver
6	chr19:43033800-43038400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr19:43033800-43038600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr19:43033800-43039200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr19:43033800-43040000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr19:43033800-43043400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr19:43033800-43044200	Weak transcription	Brain Substantia Nigra	brain
12	chr19:43034000-43038400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr19:43034000-43038400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr19:43034000-43038600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr19:43034000-43039800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr19:43034000-43043000	Weak transcription	Adipose Nuclei	Adipose
17	chr19:43034200-43038400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr19:43034200-43038400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr19:43034200-43038400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr19:43034200-43043600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr19:43035200-43037600	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr19:43036800-43042800	Weak transcription	HMEC	breast
23	chr19:43037000-43037400	Enhancers	Brain Anterior Caudate	brain
24	chr19:43037000-43037600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr19:43037000-43037600	Enhancers	Brain Hippocampus Middle	brain
26	chr19:43037000-43038000	Enhancers	Cortex derived primary cultured neurospheres	brain

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