Variant report

Variant	rs55869851
Chromosome Location	chr1:225315247-225315248
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10495229	0.84[AMR][1000 genomes]
rs10495230	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12561993	0.84[AMR][1000 genomes]
rs12562085	0.84[ASN][1000 genomes]
rs12562917	0.84[AMR][1000 genomes]
rs12563033	0.84[AMR][1000 genomes]
rs12563286	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12563857	0.84[AMR][1000 genomes]
rs12563866	0.84[AMR][1000 genomes]
rs12564768	0.84[AMR][1000 genomes]
rs12564776	0.84[AMR][1000 genomes]
rs12565073	0.84[AMR][1000 genomes]
rs12565401	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12565439	0.84[AMR][1000 genomes]
rs12565823	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12565833	0.84[AMR][1000 genomes]
rs12566396	0.84[AMR][1000 genomes]
rs12566857	0.84[AMR][1000 genomes]
rs12566886	0.84[AMR][1000 genomes]
rs12567069	0.84[AMR][1000 genomes]
rs12567082	0.84[AMR][1000 genomes]
rs12567091	0.84[AMR][1000 genomes]
rs12567334	0.84[AMR][1000 genomes]
rs12567499	0.84[AMR][1000 genomes]
rs12567812	0.84[AMR][1000 genomes]
rs12568142	0.84[AMR][1000 genomes]
rs12568753	0.82[ASN][1000 genomes]
rs1480104	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1482280	0.84[AMR][1000 genomes]
rs1506070	0.84[AMR][1000 genomes]
rs1542571	0.84[ASN][1000 genomes]
rs1587980	0.84[AMR][1000 genomes]
rs1600532	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16843950	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16843956	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16843988	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16843997	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16844005	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16844334	0.85[ASN][1000 genomes]
rs16844355	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16844377	0.84[ASN][1000 genomes]
rs16844400	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16858661	0.84[AMR][1000 genomes]
rs16858758	0.84[AMR][1000 genomes]
rs16858766	0.84[AMR][1000 genomes]
rs16858829	0.84[AMR][1000 genomes]
rs16858831	0.84[AMR][1000 genomes]
rs16858932	0.84[AMR][1000 genomes]
rs16858962	0.84[AMR][1000 genomes]
rs1905113	0.84[AMR][1000 genomes]
rs1905115	0.84[AMR][1000 genomes]
rs1905117	0.84[AMR][1000 genomes]
rs1934203	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1961688	0.84[AMR][1000 genomes]
rs1982707	0.84[AMR][1000 genomes]
rs2086368	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2128267	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2199832	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2291227	0.84[AMR][1000 genomes]
rs2405701	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2456335	0.81[ASN][1000 genomes]
rs3101907	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3101908	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3101915	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3101919	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3102114	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3105549	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3105555	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3105570	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3105571	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3120985	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3120992	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3128659	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3128663	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3128665	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3128669	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3128670	0.81[ASN][1000 genomes]
rs3991317	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4342820	0.84[ASN][1000 genomes]
rs4379650	0.85[AMR][1000 genomes]
rs55668169	0.84[AMR][1000 genomes]
rs55681905	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55752383	0.81[AMR][1000 genomes]
rs55761817	0.83[AMR][1000 genomes]
rs55785201	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55786647	0.84[AMR][1000 genomes]
rs55876129	0.84[AMR][1000 genomes]
rs55962425	0.84[AMR][1000 genomes]
rs56061128	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56088704	0.84[AMR][1000 genomes]
rs56107523	0.82[ASN][1000 genomes]
rs56152573	0.84[AMR][1000 genomes]
rs56251723	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56275175	0.81[AMR][1000 genomes]
rs56337810	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57889280	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs58279596	0.82[ASN][1000 genomes]
rs60392992	0.85[ASN][1000 genomes]
rs60692803	0.84[ASN][1000 genomes]
rs6426049	0.84[ASN][1000 genomes]
rs6426052	0.84[ASN][1000 genomes]
rs6662231	0.84[ASN][1000 genomes]
rs6697156	0.84[AMR][1000 genomes]
rs6702926	0.85[ASN][1000 genomes]
rs7517625	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7523949	0.84[AMR][1000 genomes]
rs7531542	0.84[AMR][1000 genomes]
rs7545060	0.85[EUR][1000 genomes]
rs7547639	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs769295	0.83[ASN][1000 genomes]
rs973980	0.84[ASN][1000 genomes]
rs981068	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873225	chr1:225162060-225373936	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549262	chr1:225191852-225319898	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv549263	chr1:225202426-225319898	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv998899	chr1:225210813-225496353	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv524461	chr1:225304331-225347689	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv468205	chr1:225304971-225476025	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv549264	chr1:225304971-225476025	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225301800-225355800	Weak transcription	Pancreas	Pancrea
2	chr1:225310400-225315400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:225311600-225315400	Weak transcription	Fetal Intestine Large	intestine
4	chr1:225313200-225315400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr1:225313200-225315800	Weak transcription	Ovary	ovary

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