Variant report

Variant	rs558700389
Chromosome Location	chr13:96138196-96138197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043019	chr13:95924585-96152616	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1037673	chr13:95930191-96146554	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541882	chr13:95930191-96146554	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2752652	chr13:96059024-96181597	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv900933	chr13:96138087-96215289	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96127800-96144600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:96135800-96138600	Enhancers	Pancreas	Pancrea
3	chr13:96137000-96138400	Enhancers	K562	blood
4	chr13:96137200-96138200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr13:96137200-96138400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr13:96137200-96138400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr13:96137200-96138400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr13:96137200-96138400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr13:96137200-96138400	Enhancers	Right Atrium	heart
10	chr13:96137200-96138600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr13:96137200-96138600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr13:96137200-96138600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr13:96137200-96138600	Enhancers	HMEC	breast
14	chr13:96137200-96138600	Enhancers	HUVEC	blood vessel
15	chr13:96137200-96139000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr13:96137400-96138200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr13:96137400-96138200	Weak transcription	Spleen	Spleen
18	chr13:96137400-96138200	Enhancers	GM12878-XiMat	blood
19	chr13:96137400-96138200	Enhancers	Osteobl	bone
20	chr13:96137400-96138400	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr13:96137400-96138400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr13:96137400-96138400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr13:96137400-96138400	Enhancers	NH-A	brain
24	chr13:96137400-96138600	Enhancers	Primary hematopoietic stem cells	blood
25	chr13:96137400-96138600	Enhancers	NHEK	skin
26	chr13:96137600-96138400	Weak transcription	Esophagus	oesophagus
27	chr13:96137800-96138200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr13:96138000-96138200	Enhancers	NHDF-Ad	bronchial
29	chr13:96138000-96138400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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